Chen Z, Martinez DA, Gujja S, et al. Comparative genomic and transcriptomic analysis of wangiella dermatitidis, a major cause of phaeohyphomycosis and a model black yeast human pathogen. G3 (Bethesda). 2014;4(4):561-78. doi:10.1534/g3.113.009241.

Diepeveen ET, Gehrmann T, Pourquié V, Abeel T, Laan L. Patterns of Conservation and Diversification in the Fungal Polarization Network. Genome Biol Evol. 2018;10(7):1765-1782. doi:10.1093/gbe/evy121.

Fellers JP, Soltani BM, Bruce M, et al. Conserved loci of leaf and stem rust fungi of wheat share synteny interrupted by lineage-specific influx of repeat elements. BMC Genomics. 2013;14:60. doi:10.1186/1471-2164-14-60.

Kellis M, Birren BW, Lander ES. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature. 2004;428(6983):617-24. doi:10.1038/nature02424.

Perlin MH, Amselem J, Fontanillas E, et al. Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. BMC Genomics. 2015;16:461. doi:10.1186/s12864-015-1660-8.

Batzoglou S, Jaffe DB, Stanley K, et al. ARACHNE: a whole-genome shotgun assembler. Genome Res. 2002;12(1):177-89. doi:10.1101/gr.208902.

Amselem J, Cuomo CA, van Kan JAL, et al. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet. 2011;7(8):e1002230. doi:10.1371/journal.pgen.1002230.

Schmidt SM, Lukasiewicz J, Farrer R, van Dam P, Bertoldo C, Rep M. Comparative genomics of Fusarium oxysporum f. sp. melonis reveals the secreted protein recognized by the Fom-2 resistance gene in melon. New Phytol. 2016;209(1):307-18. doi:10.1111/nph.13584.

Causton HC, Ren B, Koh SS, et al. Remodeling of yeast genome expression in response to environmental changes. Mol Biol Cell. 2001;12(2):323-37.

Neafsey DE, Barker BM, Sharpton TJ, et al. Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control. Genome Res. 2010;20(7):938-46. doi:10.1101/gr.103911.109.