1.
Kelly M, Pasmans F, Muñoz JF, et al. Diversity, multifaceted evolution, and facultative saprotrophism in the European Batrachochytrium salamandrivorans epidemic. Nat Commun. 2021;12(1):6688. doi:10.1038/s41467-021-27005-0.
1.
Metsky HC, Matranga CB, Wohl S, et al. Zika virus evolution and spread in the Americas. Nature. 2017;546(7658):411-415. doi:10.1038/nature22402.
1.
Grubaugh ND, Ladner JT, Kraemer MUG, et al. Genomic epidemiology reveals multiple introductions of Zika virus into the United States. Nature. 2017;546(7658):401-405. doi:10.1038/nature22400.
1.
Rhodes J, Abdolrasouli A, Farrer RA, et al. Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris. Emerg Microbes Infect. 2018;7(1):43. doi:10.1038/s41426-018-0045-x.
1.
Metsky HC, Siddle KJ, Gladden-Young A, et al. Capturing sequence diversity in metagenomes with comprehensive and scalable probe design. Nat Biotechnol. 2019;37(2):160-168. doi:10.1038/s41587-018-0006-x.
1.
Dudas G, Carvalho LM, Bedford T, et al. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature. 2017;544(7650):309-315. doi:10.1038/nature22040.
1.
D’Souza CA, Kronstad JW, Taylor G, et al. Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. MBio. 2011;2(1):e00342-10. doi:10.1128/mBio.00342-10.
1.
McElroy KL, Santiago GA, Lennon NJ, Birren BW, Henn MR, Muñoz-Jordán JL. Endurance, refuge, and reemergence of dengue virus type 2, Puerto Rico, 1986-2007. Emerg Infect Dis. 2011;17(1):64-71. doi:10.3201/eid1701.100961.
1.
Navarro-Garcia F. Escherichia coli O104:H4 Pathogenesis: an Enteroaggregative E. coli/Shiga Toxin-Producing E. coli Explosive Cocktail of High Virulence. Microbiol Spectr. 2014;2(6). doi:10.1128/microbiolspec.EHEC-0008-2013.
1.
Gire SK, Stremlau M, Andersen KG, et al. Epidemiology. Emerging disease or diagnosis?. Science. 2012;338(6108):750-2. doi:10.1126/science.1225893.