| Genome | Sequence | Log-odds score | Z-score | Genome browser |
| hg17 | GTCAGCACCACGGACAGCTCCC | 30.38 | 6.55 | chr16:10896882-10896903 |
| mm5 | GTCAGAACCATGGACAGCTCCC | 26.44 | 6.13 | chr16:10192403-10192424 |
| rn3 | GTCAGAACCATGGACAGCTCCC | 26.44 | 6.13 | chr10:5112654-5112675 |
| canFam1 | GTCAGCACCACAGACAGCTCCA | 24.61 | 5.93 | chr6:33408287-33408308 |
| Distance | Gene | Description |
| -49060 | KIAA0350 | hypothetical protein LOC23274 |
| 223 | AY699071 | CIITA IV. |
| 18194 | U31931 | Class II MHC mutant RJ2.2.5. |
| 18309 | U18288 | MHC class II transactivator CIITA. |
| 18309 | MHC2TA | MHC class II transactivator |
| 18312 | AY084054 | MHC class II transactivator CIITAmed. |
| 46855 | DEXI | dexamethasone-induced protein |