Your immune system is quite clever. It can sense when bacteria, viruses, or pathogens are invading, distinguish among them, and respond accordingly. But an overactive or improperly functioning immune system can lead to a variety of problems such as auto-immune diseases like lupus or diseases related to inflammation, such as hardening of the arteries (atherosclerosis). Nir Hacohen and his colleagues at the Broad Institute and Massachusetts General Hospital want to find out more about the intricacies of how the immune system works and how it relates to these diseases.