| File |
Load from File |
Displays genomic data from one or more files. more... |
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Load from URL |
Displays genomic data from a file identified by URL. more... |
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Load from Server |
Displays genomic data from the IGV data server. more... |
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Load from DAS |
Displays genomic data from a Distributed Annotation Server (DAS). more... |
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New Session |
Unloads all currently loaded data, as if you exited and restarted IGV. more... |
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Open Session |
Opens a previously saved session file. more... |
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Save Session |
Saves your current settings to a named session file. more... |
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Load Genome |
Loads a genome into IGV. |
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Import Genome |
Imports a genome into IGV. more... |
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Remove Imported Genomes |
Removes an imported genome from the Genomes drop-down list in the tool bar. more... |
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Save Image |
Saves a snapshot of the IGV window to a graphics file, omitting the menu bar and tool bar. Can save in .png, .jpg, or .svg format. |
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Export Regions |
Saves currently defined regions of interest to a BED file. If no regions of interest are defined, no BED file is created. more... |
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Import Regions |
Imports regions of interest from a BED file. more... |
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Clear Regions |
Removes all currently defined regions of interest. more... |
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Run Batch Script |
Executes a series of sequential tasks. Users can load at .txt file that contains a list of commands, one per line, that will be run by IGV. The accepted commands are the same as the IGV Port Commands. |
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Run igvtools |
Launches the igvtools interface window. |
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Exit |
Closes IGV. |
| View |
Preferences |
Opens a tabbed menu of data display preferences. more... |
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Color Legends |
Displays color legends for track data, which may be modified. more... |
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Show Name Panel |
Shows/hides the track name panel. |
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Set Name Panel Width |
Resets the track name panel width. |
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Show Attribute Display |
Shows/hides attributes and attribute values. more... |
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Select Attributes to Show |
Shows/hides selected attributes and attribute values. more... |
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Reorder Panels |
Allows the user to reorder the display panels. |
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Gene Lists |
Opens the gene lists window. more... |
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Region Navigator |
Opens the region navigator. more... |
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Go to |
View and select loci visited in your navigation history. |
| Tracks |
Sort Tracks |
Sorts track data. more... |
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Group Tracks |
Groups track data. more... |
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Filter Tracks |
Filters track data. more... |
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Fit Data to Window |
Sets the track height to display all of the data, or as much data as possible. more... |
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Set Track Height |
Sets the track height to a specified value. more... |
| Help |
Help |
Displays the IGV User Guide. |
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Tutorial |
Displays the IGV Quick Start. |
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Contact Support |
Opens an email to IGV-help. |
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About IGV |
Displays IGV version and build number. |
