Recently uploaded modules

ReannotateGCT v.7.3
Annotation, chip, gct   kevyin   09/02/2011    
Fills the Description column of a GCT file with information from a CHIP file Note: Chip file drop down menu will not work. See documentation for more...
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NormalizeColumns v.4.3
gct, Preprocess and Utilities   kevyin   09/01/2011    
Apply a (quantile, scale, or Znorm) normalization on a GCT file. Note: To write to .png; R with Xlib or cairo support is required. Otherwise a .pdf...
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LogTransform v.3.3
gct, Log Transformation, Preprocess and Utilities   kevyin   09/01/2011    
Apply a log base 2 transformation to data from a GCT file.
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ExpressCluster RC1
Clustering, Visualizer   GenePatternTeam   08/01/2011    
Interactive GUI-based K-Means clustering of gene expression profiles. • Input: GCT (can add RES support if needed). • Input: CLS (optional...
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GeneListToKDAList v.6
SAGE   ted   04/25/2011    
Converts the gene list output by ComparativeMarkerSelection to the format used by the SAGE Key Driver Analysis module
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GParc General Forum Topics

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Forum Topic Tags Rating Replies Author Posted last
Survival Gene Example data Survival analysis 0 1 Deepti Narasimhaiah 03/13/2013
Survival Gene download Survival analysis 0 1 Deepti Narasimhaiah 03/08/2013
@BioStarQuestion This request has been replied to by a GenePattern team member t.co/nrbI4QVtCZ
3 weeks 4 days ago.
HierarchicalClusteringViewer has been updated for Java 7 compatibility. t.co/zGMJBBMpPB #bioinformatics
4 weeks 5 days ago.
RankNormalize released: transform array data to help compare datasets from different platforms t.co/zGMJBBMpPB #bioinformatics
8 weeks 2 days ago.
Well written article on Best Practices for Scientific Computing t.co/3t8RquGpW2 worth the read and continued thought.
10 weeks 2 days ago.
GSEALeadingEdgeViewer has been updated for Java 7 compatibility. Visualize your GSEA results. t.co/zGMJBBMpPB #bioinformatics
10 weeks 2 days ago.
ssGSEAProjection updated: Single Sample GSEA. Now with v3.1 MSigDB gene set databases. t.co/MW2ONHID #GSEA #bioinformatics
13 weeks 2 days ago.
Using GENE-E in GenePattern to create a heat map with data from @InSilicoDB t.co/zapLCLLD #bioinformatics #howto
19 weeks 3 days ago.
Copy Number Inference Pipeline - generate segmented copy num data from Affy SNP6 chips. t.co/MW2ONHID #bioinformatics #TCGA
21 weeks 5 days ago.
MAGETABImportViewer updated: convert MAGE-TAB files for use in GenePattern. t.co/MW2ONHID #bioinformatics @FGED
23 weeks 2 days ago.
RT @InSilicoDB: Newly Minted InSilico Genomics to Commercialize Genomic Data Hub, Offer RNA-seq Analysis Services t.co/dOMiJ7dx
23 weeks 5 days ago.