Credits

The Genome STRiP team is based at the Broad Institute and at the McCarroll Lab at the Harvard Medical School Department of Genetics.

Bob Handsaker, Methods and Software Development
Steve McCarroll, Principal Investigator

We would also like to thank Josh Korn, Jim Nemesh and Milan Kantesaria for significant contributions to the development of the methods embodied in Genome STRiP. Our work has benefitted greatly from numerous conversations with Nick Patterson, Brian Browning, Heng Li, Matt Hurles, Mark de Pristo and all of the members of the 1000 Genomes Project Structural Variation and Analysis Groups.

Genome STRiP utilizes the following major software tools and libraries

The Genome Analysis Toolkit (GATK)
Picard / SAM JDK
The R Project for Statistical Computing
Samtools
BWA
Java