Category Archives: Assemblies

Male Ferret assembly released

The ALLPATHS-LG assembly of male Ferret (Mustela putorius furo) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 66.7 9.6 AGTQ00000000 MusPutFurMale1.0 Please read our … Continue reading

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Guide to using Broad genome assemblies in your research

The ALLPATHS-LG genome assemblies produced here at the Broad Institute are available for download via the Broad FTP site and NCBI. However, some restrictions on their use may apply, and it is therefore important that you follow the guidelines given … Continue reading

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Four Cichlid assemblies released

The ALLPATHS-LG assemblies of four Cichlid fish (Pundamilia nyererei, Neolamprologus brichardi, Haplochromis burtoni and Maylandia zebra) are now available via NCBI and the Broad Institute ftp site. The basic statistics and locations are given below: Species Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # … Continue reading

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Ground Squirrel assembly released

The ALLPATHS-LG assembly of Ground Squirrel (thirteen-lined) (Spermophilus tridecemlineatus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 44.1 8.2 AGTP00000000 groundsquirrel Please read … Continue reading

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Squirrel Monkey assembly released

The ALLPATHS-LG assembly of Squirrel Monkey (Samiri boliviensis) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 38.8 18.7 AGCE00000000 squirrelmonkey Please read our … Continue reading

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Coelacanth assembly released

The ALLPATHS-LG assembly of Coelacanth (Latimeria chalumnae) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 12.7 0.8 AFYH00000000 Latcha1 Please read our release terms and … Continue reading

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Ferret assembly released

The ALLPATHS-LG assembly of female Ferret (Mustela putorius furo) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 45 9.1 AEYP00000000 MusPutFur1.0 Please read … Continue reading

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New ALLPATHS-LG assemblies released

Our assemblies of Bushbaby (O. garnettii) and Tilapia (O. niloticus) are now available via NCBI and the Broad Institute ftp site, alongside our previous Human NA12878 and Mouse B6 (strain C57BL/6J) assemblies. Their basic statistics and locations are given below: Species Contig N50 (kb) Scaffold … Continue reading

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