Category Archives: Assemblies

American Pika assembly released

The ALLPATHS-LG assembly of the American Pika (Ochotona princeps) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 42.3 26.9 ALIT00000000 OchPri3.0 Please read our … Continue reading

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Common Shrew assembly released

The ALLPATHS-LG assembly of the Common Shrew (Sorex araneus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 22.6 22.8 AALT00000000 SorAra2.0 Please read our … Continue reading

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Rhino assembly released

The ALLPATHS-LG assembly of Rhino (Ceratotherium simum simum) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 93.0 26.3 AKZM00000000 CerSimSim1.0 Please read our release terms … Continue reading

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Jerboa assembly released

The ALLPATHS-LG assembly of Jerboa (Jaculus jaculus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 15.7 22.1 AKZC00000000 JacJac1.0 Please read our release terms and conditions.

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Chinchilla assembly released

The ALLPATHS-LG assembly of Chinchilla (Chinchilla lanigera) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 61.1 21.9 AGCD00000000 ChiLan1.0 Please read our release terms and … Continue reading

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Star Nosed Mole assembly released

The ALLPATHS-LG assembly of Star Nosed Mole (Condylura cristata) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 46.2 55.5 AJFV00000000 ConCri1.0 Please read our … Continue reading

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Degu assembly released

The ALLPATHS-LG assembly of Degu (Octodon degus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 19.8 12.1 AJSA00000000 OctDeg1.0 Please read our release terms and … Continue reading

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Naked Mole Rat assembly released

The ALLPATHS-LG assembly of Naked Mole Rat (Heterocephalus glaber) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 47.8 20.5 AHKG00000000 nakedmolerat Please read our … Continue reading

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Manatee assembly released

The ALLPATHS-LG assembly of Manatee (Trichechus manatus latirostris) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 37.8 14.4 AHIN00000000 TriManLat1.0 Please read our release terms and … Continue reading

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Spotted Gar assembly released

The ALLPATHS-LG assembly of Spotted Gar (Lepisosteus oculatus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 68.6 6.9 AHAT00000000 LepOcu1 Please read our release terms … Continue reading

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