Author Archives: AllpathsIain

Big Brown Bat assembly released

The ALLPATHS-LG assembly of Big Brown Bat (Eptesicus fuscus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 21.4 13.5 ALEH00000000 EptFus1.0 Please read our … Continue reading

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Transitioning to community support for ALLPATHS-LG

Over the past two years we have provided direct support to ALLPATHS-LG users. We believe this has been valuable to all, including us, as it has allowed us to improve our product — making it easier to install and use, … Continue reading

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Stand alone Error Correction now supports paired reads

The error correction script now supports paired end reads. Simply supply two Fastq files (one for each read direction) and the corrected reads will be returned in the same format. In addition, you may also now run the fragment filling code … Continue reading

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Cape Elephant Shrew assembly released

The ALLPATHS-LG assembly of the Cape Elephant Shrew (Elephantulus edwardii) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 24.2 15.0 AMGZ00000000 EleEdw1.0 Please read … Continue reading

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Aardvark assembly released

The ALLPATHS-LG assembly of Aardvark (Orycteropus afer afer) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 17.7 7.9 ALYB00000000 OryAfe1.0 Please read our release terms … Continue reading

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Easy stand alone Error Correction

The ALLPATHS-LG fragment read error correction modules are now available for stand alone use outside the full assembly pipeline. You can now easily error correct your own data using our method without running an assembly. Simply supply a Fastq file … Continue reading

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European Hedgehog assembly released

The ALLPATHS-LG assembly of the European Hedgehog (Erinaceus europaeus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 21.4 3.3 AMDU00000000 EriEur2.0 Please read our … Continue reading

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Cape Golden Mole assembly released

The ALLPATHS-LG assembly of the Cape Golden Mole (Chrysochloris asiatica) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 19.6 13.5 AMDV00000000 ChrAsi1.0 Please read our … Continue reading

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American Pika assembly released

The ALLPATHS-LG assembly of the American Pika (Ochotona princeps) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 42.3 26.9 ALIT00000000 OchPri3.0 Please read our … Continue reading

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Common Shrew assembly released

The ALLPATHS-LG assembly of the Common Shrew (Sorex araneus) is now available via NCBI and the Broad Institute ftp site. The basic statistics and location are given below: Contig N50 (kb) Scaffold N50 (Mb) NCBI Accession # Broad FTP 22.6 22.8 AALT00000000 SorAra2.0 Please read our … Continue reading

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