Use our search function, browse the complete software collection or click on one of the software categories listed below:
Genetic Analysis: GWAS Genetic Variation Linkage Analysis Gene Expression
Sequence Analysis: Assembly Annotation Alignment RNAi RNA-seq Primer Design Next Generation Tools Phylogenetic Analysis Gene Structure Viral
Primer3 is a tool used to choose primers for PCR reactions.
PriSM is a set of algorithms designed specifically to create degenerate primers for the amplification and sequencing of short viral genomes while maintaining sample population diversity.
Scripture is a method for transcriptome reconstruction that relies solely on RNA-Seq reads and an assembled genome to build a transcriptome ab initio.
Siphy analyzes multiple sequence alignments and single outs bases or small regions that are undergoing selection by looking at reduction in substitution rates and unexpected detecting substitution patterns. A specific program to detect conserved transcription factor binding sites is also available.
SomaticCall is a program that finds single-base differences (substitutions) between sequence data from tumor and matched normal samples.
SWAP454 is a tool for calling SNPs using 454 read data.
TreeChopper clusters tree leaf nodes according to phylogenetic distance.
VAAL is a variant ascertainment algorithm that can be used to detect SNPs, indels, and more complex genetic variants.
WigeoN examines the sequence conservation between a query and a trusted reference sequence