V-FAT Release History
Current Version: v1.1
released date: 2012.11.09
comments: fixed major bugs in scripts to convert sam output of Mosaik2 to qlx. The impact of these bugs on the end results of the V-FAT pipeline may be small, since they are only damaging to data if multiple iterations of sam to qlx conversion are performed. We still recommend upgrading to this version for all users.
- fixed two bugs in samToQlx.pl. One was causing forward and reverse reads to be flipped in orientation with each run of samToQlx.pl. The other was causing reads with clipped alignments in the Mosaik2 output to become rearranged on conversion to .qlx format.
- samToQlx.pl now supports conversion of hard clipped reads
fixed several bugs in the output of clipping information for reads in SAM format when running qlxToSam.pl. Although these bugs were severe, qlxToSam.pl is not used in the standard RC454 process, so they would have had no effect on standard analyses.
released date: 2012.10.16
comments: initial release