Cancer Portals Overview
A number of cancer portals have been developed to streamline viewing and analysis of related data.
Integrative Cancer Biology Program (ICBP) Data & Analysis Portal
The ICBP Data and Analysis Portal serves as an information hub of the ICBP program enabling resource sharing, annotation, and data integration and analysis. The portal provides access to datasets, analysis tools, visualizations, and other resources produced by the ICBP Centers for Cancer Systems Biology.
Multiple Myeloma Genomics Portal (MMGP)
The Multiple Myeloma Genomics Portal (MMGP) provides access to and analysis of the MMGP portal data sets. These include the MMRC-funded reference collection of paired aCGH and gene expression data as well as several additional public multiple myeloma datasets.
Cancer Cell Line Encyclopedia (CCLE)
The Cancer Cell Line Encyclopedia (CCLE) project is a collaboration between the Broad Institute, and the Novartis Institutes for Biomedical Research and its Genomics Institute of the Novartis Research Foundation to conduct a detailed genetic and pharmacologic characterization of a large panel of human cancer models, to develop integrated computational analyses that link distinct pharmacologic vulnerabilities to genomic patterns and to translate cell line integrative genomics into cancer patient stratification. The CCLE provides public access analysis and visualization of DNA copy number, mRNA expression and mutation data for about 1000 cell lines.
The Tumorscape portal facilitates the use and understanding of high resolution copy number data amassed from multiple cancer types. It supports gene-level analysis, analysis by cancer type, and the downloading/browsing of data.
Integrative Genomics Portal (IGP)
The Broad Integrative Genomics Portal allows the sharing (both private and public) of annotated and integrated genomic datasets. Funded by the Starr consortium, the portal provides both data analyses and visualizations.
Sarcoma Genomics Portal
The Sarcoma Genome portal gives access to and allows visualization of data obtained in the context of the Sarcoma Genome Project, a large scale cancer genomics collaboration to characterize the spectrum of genetic alterations in high-grade soft tissue sarcomas by high-throughput mutation, copy number, and expression profiling.
The Broad Melanoma Portal
The Broad/Dana Farber Cancer Institute Melanoma Portal provides the most recent updates on analysis and the data sets described in the Lin et al study on melanoma genomics.
Differentiation Map Portal (DMAP)
The Differentiation Map Portal (DMAP) contains data and publications used in the study of a differentiation map of hematopoiesis.
Cooperative Centers for Human Immunology (CCHI) Portal
The Cooperative Centers for Human Immunology (CCHI) integrative genomics portal provides participants with a site to browse, analyze, and share data from the CCHI project.