Data Release for Mammalian Genome Project

Project Data Release Summary - Mammalian Genome Project

This list represents the genomes that were used in the analysis of the Mammalian Genome Project (aka "29 Mammals.") These builds are not necessarily the most recent builds of an organisms genome (see here for those.)

Unless otherwise stated, genome builds were sequenced at the Broad Institute. ALL genomes were assembled at the Broad Institute. For all genomes, links are provided to a project page, the assembly files and NCBI's record for the latest build. When applicable, links are also provided for Ensembl (for gene annotation) and UCSC (for data visualization.)

Mammalian Genome Projects

Organism	Assembly Status	Genbank Accession	Ensembl Annotation	UCSC Browser	Notes
Alpaca Vicugna pacos	Complete	ABRR01000000	Ensembl	n/a	2x coverage, sequenced at WashU
Armadillo (Nine-banded) Dasypus novemicinctus	Complete	AAGV020000000	Ensembl	n/a	2x coverage
Bushbaby Otolemur garnetti	Complete	AAQR01000000	Ensembl	n/a	2x coverage
Cat Felis catus	Complete	AANG01000000	Ensembl	n/a	2x coverage, sequenced at Agencourt
Chimpanzee Pan troglodytus	Complete	?	Ensembl	UCSC	7x coverage
Cow Bos taurus	Complete	?	Ensembl	UCSC	7x coverage
Dog Canis Familaiaris	Complete	AACN010000000	Ensembl	UCSC	7x coverage, anchored
Dolphin, Bottlenosed Tursiops truncatus	Complete	ABRN01000000	Ensembl	n/a	2x coverage, sequenced at Baylor
Elephant, African Savannah Loxodonta africana	Complete	AAGU03000000	Ensembl	n/a	7x coverage, anchoring in progress
Guinea Pig Cavia porcellus	Complete	AAKN02000000	Ensembl	UCSC	7x coverage
Hedgehog, European Erinaceus europeaus	Complete	AANN01000000	Ensembl	n/a	2x coverage
Horse Equus caballus	Complete	AAWR02000000	Ensembl	UCSC	7x coverage (no 2X exists)
Human Homo sapiens	Complete	?	Ensembl	UCSC	Deep
Kangaroo Rat Dipodomys ordii	Complete	ABRO01000000	Ensembl	n/a	2x coverage, sequenced at Baylor
Macaque Macaca ?	Complete	?	Ensembl	n/a	2x coverage, sequenced at Baylor
Megabat (Fruitbat) Pteropus vampyrus	Complete	ABRP01000000	Ensembl	n/a	2x coverage, sequenced at Baylor
Microbat, Little Brown Myotis lucifugus	Low coverage (2x) complete	AAPE01000000	Ensembl	n/a	2x coverage
Mouse Mus musculus	Complete	?	Ensembl	n/a	2x coverage
Mouse Lemur Microcebus murinus	Complete	ABDC01000000	Ensembl	n/a	2x coverage
Pika Ochotona princeps	Complete	AAYZ01000000	Ensembl	n/a	2x coverage
Rabbit, European Oryctolagus cuniculus	Complete	AAGW02000000	Ensembl	n/a	7x coverage, anchored
Rat Rattus norvegicus	Complete	?	Ensembl	n/a	7x coverage
Rock Hyrax Procavia capensis	Complete	ABRQ01000000	Ensembl	n/a	2x coverage, sequenced at Baylor
Shrew, Common Sorex araneus	Complete	AALT01000000	Ensembl	n/a	2x coverage
Shrew, Tree Tupaia belangeri	Complete	AAPY01000000	Ensembl	n/a	2x coverage
Sloth (Two-toed) Choloepus hoffmanni	Complete	ABVD01000000	Ensembl	n/a	2x coverage, sequenced at WashU
Squirrel, Ground Spermophilis tridecemlineatus	Complete	AAQQ01000000	Ensembl	n/a	2x coverage
Tarsier Tarsier syrichta	Complete	ABRT010000000	Ensembl	n/a	2x coverage, sequenced at Baylor
Tenrec (Lesser hedgehog) Echinops telfari	Complete	AAIY01000000	Ensembl	n/a	2x coverage

For more information on these projects, please contact us at vertebrategenomes@broadinstitute.org.

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