Projects

• Click on any of the links below for Project information and Data:
  
  Actinoymyces
• Aedes aegypti
• Bacillus cereus
• Brucella spp.
• Burkholderia cenocepacia
• Coccidioides spp.
• Culex pipiens
• Dengue virus
• Dimorphic fungi
• Enterococcus spp
  Enterococcus colonization
  Comparative genome sequencing for analysis of Enterococcus faecium colonization factors
  Enterococcus group
  Emergence and transfer of antibiotic resistances in leading causes of multiple antibiotic resistant infection: The Enterococci
• Escherichia spp.
  Escherichia coli Antibiotic Resistance
  A genome-based investigation into the evolution of antibiotic resistance and virulence in Escherichia coli
  Persistence Genes 1 & 2
  Bacterial persistence gene identification in E. coli, P. aeruginosa, M. tuberculosis and C. albicans.
  Escherichia coli O104:H4 Database
  The European E. coli Outbreak in Germany, May 2011: Gene Gain and Loss, and Evolutionary Context
• Ferret (Mustela putorius furo)
• Filarial worms
• Francisella spp.
• Haemophilus influenzae
• Hepatitis C virus
• Herpes Simplex Complex
• Lactobacillus spp.
• Listeria monocytogenes
• Infant Gut Flora & Antibiotics
• Microsporidia spp.
• Mycobacteria tuberculosis
  
  M.tb Comparative
  Comparative genome sequencing of Mycobacteria tuberculosis.
  M.tb MicroEvolution
  Understanding multidrug resistant (MDR) and extreme drug resistant (XDR) strains of Mycobacterium tuberculosis.
  M.tb Mutation Rate
  Determining the natural mutation rate of Mycobacterium tuberculosis
  M.tb Phylogenetic ("Diversity")
  Understanding the pan-genome, population genetics and evolutionary history of the human pathogen Mycobacterium tuberculosis.
  M.tb Reference Strain Project
  Sequencing and finishing of the Mycobacterium tuberculosis H37Rv CSU and Erdman_WHO reference strains
  M.tb PGG1
  Ultra-deep re-sequencing of Mycobacterium tuberculosis principal genetic group 1
  Persistence Genes 1 & 2
  Bacterial persistence gene identification in E. coli, P. aeruginosa, M. tuberculosis and C. albicans.
  TraCS for M. tb
  Identification of novel drug targets through genome-wide mapping of metabolic networks in Mycobacterium tuberculosis
• Neisseria gonorrhoeae
• Persistence genes
• Plasmodium spp.
  Plasmodium falciparum
  Comparative genomic sequencing of Plasmodium falciparum
  Plasmodum vivax
  Neglected burden of human vivax malaria: Comparative analysis of Plasmodium vivax and key related species.
  Plasmodium spp. Comparative Genomics
  Comprehensive sequencing of malarial parasites: Plasmodium species.
• Pseudomonas aeruginosa
  Pseudomonas
  Understanding cystic fibrosis pathogenesis through Pseudomonas aeruginosa sequence analysis
  Persistence Genes 1 & 2
  Bacterial persistence gene identification in E. coli, P. aeruginosa, M. tuberculosis and C. albicans.
• Staphylococcus aureus
  Staphylococcus Comparative
  High-resolution genome level characterization of clinical isolates of methicillin-resistant Staphylococcus aureus.
  Staphylococcus Drug Resistance Evolution
  Genetic evolution of antimicrobial resistance in Staphylococcus aureus.
• Streptococcus spp.
  Group A Streptococcus
  Molecular pathogenomics of group A Streptococcus epidemics, clone emergence, and strain genotype-patient phenotype dissection
• Vibrio cholerae
  Vibrio cholerae
  Genome improvement of Vibrio cholerae
  Vibrio cholerae transcriptome
  Using next-generation sequencing technology to define the Vibrio cholerae transcriptome
• West Nile Virus

GSCID funding was provided by the National Institute of Allergy and Infectious Diseases