- support for X chromosome
- major memory usage improvements
- allow multiple analysis tracks and label Y axis
- added user defined hapmap sample option
- added haplotypes only permutation option
- added option to show different LD measures or hide them
- added -memory switch and changed default to 512M
- added minor allele to check panel
- added progress bar for data loading
- support for alphabetical (ACGT) input format
- added individual information dialog
- added check panel for phased haps files
- added dump tags button
- last popup dialog is shown at top of display
- added GOLD style color scheme
- can sort tables by clicking on headers
- changed case control allele order
- fixed grey screen with no text bug
- fixed tagger bugs for maxnumtags and forceinclude
- fixed batch mode for hapmap files
- fixed Tagger bug where some SNPs were tagged by more than one tag.
- fixed export options bug with association tab
- fixed generateHaplotyeps bug for matching alleles
