Transcript: Human XM_005272239.2

PREDICTED: Homo sapiens ADAMTS like 2 (ADAMTSL2), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ADAMTSL2 (9719)
Length:
3601
CDS:
91..2946

Additional Resources:

NCBI RefSeq record:
XM_005272239.2
NBCI Gene record:
ADAMTSL2 (9719)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005272239.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000118525 GCCCGAGACATCCAGATTGTA pLKO.1 805 CDS 100% 5.625 7.875 N ADAMTSL2 n/a
2 TRCN0000438962 GACGAAGCTGGCTACTACTTC pLKO_005 862 CDS 100% 4.950 6.930 N ADAMTSL2 n/a
3 TRCN0000439446 GGAATGCCCACCTTGGTTACT pLKO_005 758 CDS 100% 4.950 6.930 N ADAMTSL2 n/a
4 TRCN0000118526 CATCCAGATTGTAGAGAGGAA pLKO.1 813 CDS 100% 2.640 3.696 N ADAMTSL2 n/a
5 TRCN0000118523 GAGAGCTTCTTCGTGGATTAT pLKO.1 1567 CDS 100% 13.200 9.240 N ADAMTSL2 n/a
6 TRCN0000441484 ATCTCCAGCAAACCGTGTGAC pLKO_005 517 CDS 100% 4.050 2.835 N ADAMTSL2 n/a
7 TRCN0000118524 CCTGAATGTCATGGTGTGGAA pLKO.1 1017 CDS 100% 2.640 1.848 N ADAMTSL2 n/a
8 TRCN0000118522 GCCTTCTGAAGGAAACTTGCA pLKO.1 3330 3UTR 100% 2.640 1.848 N ADAMTSL2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005272239.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.