Transcript: Human NR_027873.1

Homo sapiens PAX3 and PAX7 binding protein 1 (PAXBP1), transcript variant 3, non-coding RNA.

Source:
NCBI, updated 2019-02-06
Taxon:
Homo sapiens (human)
Gene:
PAXBP1 (94104)
Length:
4028
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_027873.1
NBCI Gene record:
PAXBP1 (94104)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_027873.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235392 GGTATTGGTGAACGGTATAAA pLKO_005 1496 3UTR 100% 15.000 21.000 N PAXBP1 n/a
2 TRCN0000244536 GGTATTGGTGAACGGTATAAA pLKO_005 1496 3UTR 100% 15.000 21.000 N Paxbp1 n/a
3 TRCN0000235395 GTACACTTAGCGGATACAATT pLKO_005 2776 3UTR 100% 13.200 10.560 N PAXBP1 n/a
4 TRCN0000235393 TATGGCATTCCTTATAGTTAT pLKO_005 1241 3UTR 100% 13.200 10.560 N PAXBP1 n/a
5 TRCN0000235394 ACGATGTGTGCAGTGTAAATT pLKO_005 3244 3UTR 100% 15.000 10.500 N PAXBP1 n/a
6 TRCN0000235396 AGTTAAGCTGTTAGGCAATTT pLKO_005 2535 3UTR 100% 13.200 9.240 N PAXBP1 n/a
7 TRCN0000000179 CTATTTGCTTGATTACCATTC pLKO.1 2981 3UTR 100% 6.000 4.200 N PAXBP1 n/a
8 TRCN0000000182 GTGATGATGATGCTTTAGTAA pLKO.1 1074 3UTR 100% 5.625 3.938 N PAXBP1 n/a
9 TRCN0000000181 CCAGAACACTTACCAGACAAT pLKO.1 1204 3UTR 100% 4.950 3.465 N PAXBP1 n/a
10 TRCN0000185948 CCGTTACTATTGATTTGGTAA pLKO.1 1344 3UTR 100% 4.950 3.465 N Paxbp1 n/a
11 TRCN0000000180 GATGATGTATTTATGCCCTTA pLKO.1 2443 3UTR 100% 4.050 2.835 N PAXBP1 n/a
12 TRCN0000000183 TCCATGAAAGAATTGCACAAA pLKO.1 1391 3UTR 100% 4.950 2.970 N PAXBP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_027873.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.