Transcript: Human NR_003661.2

Homo sapiens ubiquitin conjugating enzyme E2 Q2 pseudogene 1 (UBE2Q2P1), non-coding RNA.

Source:
NCBI, updated 2018-05-25
Taxon:
Homo sapiens (human)
Gene:
UBE2Q2P1 (388165)
Length:
2150
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_003661.2
NBCI Gene record:
UBE2Q2P1 (388165)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_003661.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000118492 CGTAAGTAGATGGCTCTCTTA pLKO.1 1794 3UTR 100% 4.950 3.465 N UBE2Q2P1 n/a
2 TRCN0000118493 AGATGAAAGAAGAGCCTACTA pLKO.1 1479 3UTR 100% 4.950 2.970 N UBE2Q2P1 n/a
3 TRCN0000040646 GCAGATTATATAACCTTCCTA pLKO.1 1329 3UTR 100% 3.000 1.800 N Ube2q2 n/a
4 TRCN0000118496 AGAGCCTACTAGTGAGAAGAA pLKO.1 1489 3UTR 100% 0.000 0.000 N UBE2Q2P1 n/a
5 TRCN0000118494 GCCTACTAGTGAGAAGAAGTT pLKO.1 1492 3UTR 100% 0.000 0.000 N UBE2Q2P1 n/a
6 TRCN0000118495 TGTTCAGCCAATCGTGTTTAA pLKO.1 1135 3UTR 100% 13.200 6.600 Y UBE2Q2P1 n/a
7 TRCN0000165534 GAGACAGGGTTTCACCATGTT pLKO.1 966 3UTR 100% 4.950 2.475 Y n/a
8 TRCN0000138140 GATTGAGACCATCCTGGCTAA pLKO.1 1942 3UTR 100% 4.050 2.025 Y LOC441087 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_003661.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12783 pDONR223 100% 8.8% None (many diffs) n/a
2 ccsbBroad304_12783 pLX_304 0% 8.8% V5 (many diffs) n/a
3 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% 8.8% V5 (many diffs) n/a
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