Transcript: Mouse NM_010772.1

Mus musculus MYC-associated zinc finger protein (purine-binding transcription factor) (Maz), mRNA.

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

shRNA constructs matching this transcript with 100% SDR[?]The SDR or "Specificity-Defining Region" encompasses the 19 bases within the shRNA stem region that are retained during siRNA processing/production. These are thus the bases that define the target specificity of the shRNA. Note that, while our shRNA designs nearly always extend the stem by two additional bases matching the intended target transcript (reported in the "Target Seq" column), these additional bases are not relevant to target specificity. match

This list includes all shRNAs that have a perfect SDR[?]The SDR or "Specificity-Defining Region" encompasses the 19 bases within the shRNA stem region that are retained during siRNA processing/production. These are thus the bases that define the target specificity of the shRNA. Note that, while our shRNA designs nearly always extend the stem by two additional bases matching the intended target transcript (reported in the "Target Seq" column), these additional bases are not relevant to target specificity. match to Mouse NM_010772.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

	Clone ID	Target Seq	Vector	Match Position	Match Region[?]The region of the transcript where the match occurs (5UTR, CDS, 3UTR). NOTE: all matches to non-coding transcripts are labeled 3UTR.	SDR Match %[?]Percent match of the "Specificity-Defining Region" of the hairpin target sequence to transcript RNA sequence. The SDR is defined as the initial 19 bases of the (21mer) target sequence. 84% = 16/19 89% = 17/19 95% = 18/19 100% = 19/19	Intrinsic Score[?]Also called "original score", this assesses the target sequence for predicted cloneability and knockdown performance.	Adjusted Score[?]Also called "specificity score", this is a function of the intrinsic score and the specificity factor.	Matches Other Mouse Gene?[?]Does this construct also match another Mouse gene an equal or better degree?	Orig. Target Gene[?]The gene that this construct was originally designed to target	Addgene[?]Link to this entity's page in the Addgene catalog, if available
1	TRCN0000235699	GATGCTGAGCTCGGCTTATAT	pLKO_005	1257	CDS	100%	15.000	21.000	N	MAZ	n/a
2	TRCN0000238893	GATGCTGAGCTCGGCTTATAT	pLKO_005	1257	CDS	100%	15.000	21.000	N	Maz	n/a
3	TRCN0000015344	CGGCCCTTCAAATGTGAGAAA	pLKO.1	1150	CDS	100%	4.950	6.930	N	MAZ	n/a
4	TRCN0000238896	CTACCACCTGAACCGACATAA	pLKO_005	933	CDS	100%	13.200	10.560	N	Maz	n/a
5	TRCN0000238897	GAGTAAGGTTGGGTGGTTAAA	pLKO_005	2011	3UTR	100%	13.200	9.240	N	Maz	n/a
6	TRCN0000238894	GGCCCTTCAAATGTGAGAAAT	pLKO_005	1151	CDS	100%	13.200	9.240	N	Maz	n/a
7	TRCN0000235703	TCTGTGAGCTCTGCAACAAAG	pLKO_005	1319	CDS	100%	10.800	7.560	N	MAZ	n/a
8	TRCN0000238895	TCTGTGAGCTCTGCAACAAAG	pLKO_005	1319	CDS	100%	10.800	7.560	N	Maz	n/a
9	TRCN0000235701	AGTTCAAGAACGGCTACAATC	pLKO_005	653	CDS	100%	10.800	7.560	N	MAZ	n/a
10	TRCN0000015345	GAGTTCAAGAACGGCTACAAT	pLKO.1	652	CDS	100%	5.625	3.938	N	MAZ	n/a

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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?]The SDR or "Specificity-Defining Region" encompasses the 19 bases within the shRNA stem region that are retained during siRNA processing/production. These are thus the bases that define the target specificity of the shRNA. Note that, while our shRNA designs nearly always extend the stem by two additional bases matching the intended target transcript (reported in the "Target Seq" column), these additional bases are not relevant to target specificity. match to the transcript NM_010772.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

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