Transcript: Human NM_001244706.1

Homo sapiens cysteine sulfinic acid decarboxylase (CSAD), transcript variant 3, mRNA.

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

shRNA constructs matching this transcript with 100% SDR[?]The SDR or "Specificity-Defining Region" encompasses the 19 bases within the shRNA stem region that are retained during siRNA processing/production. These are thus the bases that define the target specificity of the shRNA. Note that, while our shRNA designs nearly always extend the stem by two additional bases matching the intended target transcript (reported in the "Target Seq" column), these additional bases are not relevant to target specificity. match

This list includes all shRNAs that have a perfect SDR[?]The SDR or "Specificity-Defining Region" encompasses the 19 bases within the shRNA stem region that are retained during siRNA processing/production. These are thus the bases that define the target specificity of the shRNA. Note that, while our shRNA designs nearly always extend the stem by two additional bases matching the intended target transcript (reported in the "Target Seq" column), these additional bases are not relevant to target specificity. match to Human NM_001244706.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

	Clone ID	Target Seq	Vector	Match Position	Match Region[?]The region of the transcript where the match occurs (5UTR, CDS, 3UTR). NOTE: all matches to non-coding transcripts are labeled 3UTR.	SDR Match %[?]Percent match of the "Specificity-Defining Region" of the hairpin target sequence to transcript RNA sequence. The SDR is defined as the initial 19 bases of the (21mer) target sequence. 84% = 16/19 89% = 17/19 95% = 18/19 100% = 19/19	Intrinsic Score[?]Also called "original score", this assesses the target sequence for predicted cloneability and knockdown performance.	Adjusted Score[?]Also called "specificity score", this is a function of the intrinsic score and the specificity factor.	Matches Other Human Gene?[?]Does this construct also match another Human gene an equal or better degree?	Orig. Target Gene[?]The gene that this construct was originally designed to target	Addgene[?]Link to this entity's page in the Addgene catalog, if available
1	TRCN0000078524	AGAGTCCAGATTACCACGAAA	pLKO.1	687	CDS	100%	4.950	6.930	N	CSAD	n/a
2	TRCN0000078523	CTACTAACTTTCTCCTAACTA	pLKO.1	1313	3UTR	100%	5.625	3.938	N	CSAD	n/a
3	TRCN0000421505	AGTACGAGACTCTGTTCCAAA	pLKO_005	1229	3UTR	100%	4.950	3.465	N	CSAD	n/a
4	TRCN0000428401	GGAAGGGTTTGAGCTAGTCAT	pLKO_005	604	CDS	100%	4.950	3.465	N	CSAD	n/a
5	TRCN0000078525	TGAGTTTGTCAATGTGTGTTT	pLKO.1	631	CDS	100%	4.950	3.465	N	CSAD	n/a
6	TRCN0000078526	GCAGGACAAGTTCTACGATGT	pLKO.1	424	CDS	100%	4.050	2.835	N	CSAD	n/a
7	TRCN0000222574	CGCCTGTAATCCCAGCACTTT	pLKO.1	987	3UTR	100%	4.950	2.475	Y	ERAP2	n/a
8	TRCN0000140719	GATCACTTGAGGTCAGGAGTT	pLKO.1	1026	3UTR	100%	4.050	2.025	Y	P3H4	n/a
9	TRCN0000165299	GATCACTTGAGGTCAGGAGTT	pLKO.1	1026	3UTR	100%	4.050	2.025	Y	ORAI2	n/a
10	TRCN0000352971	GATCACTTGAGGTCAGGAGTT	pLKO_005	1026	3UTR	100%	4.050	2.025	Y	P3H4	n/a
11	TRCN0000078113	GCCTGTAATCCCAGCACTTTA	pLKO.1	988	3UTR	100%	13.200	6.600	Y	LIAS	n/a

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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?]The SDR or "Specificity-Defining Region" encompasses the 19 bases within the shRNA stem region that are retained during siRNA processing/production. These are thus the bases that define the target specificity of the shRNA. Note that, while our shRNA designs nearly always extend the stem by two additional bases matching the intended target transcript (reported in the "Target Seq" column), these additional bases are not relevant to target specificity. match to the transcript NM_001244706.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

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