Transcript: HcRed.1

Identifier:
Hahn Lab 
Description:
far-red fluorescent protein
Taxon:
CONTROL
Gene:
Hahn Lab HcRed
Length:
687
CDS:
1..687

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to HcRed.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

No results found.

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript HcRed.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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shRNA Candidate Sequences

Show high scoring hairpin designs for this transcript.

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Note
1 BRDN0000464765 pDONR223 0% 99.5% 99.5% None 685_687delTTG
2 ccsbBroad301_99990 pLX_TRC301 0% 99.5% 99.5% None 685_687delTTG
3 ccsbBroad301_99981 pLX_TRC301 0% 99.5% 99.5% None 685_687delTTG
4 ccsbBroad301_99989 pLX_TRC301 0% 99.5% 99.5% None 685_687delTTG
5 ccsbBroad301_99988 pLX_TRC301 0% 99.5% 99.5% None 685_687delTTG
6 ccsbBroad304_99990 pLX_TRC304 75.8% 99.5% 99.5% V5 685_687delTTG
7 BRDN0000559442 pLX_TRC307 0% 99.5% 99.5% V5 685_687delTTG
8 BRDN0000464778 pLX_TRC302 0% 99.5% 99.5% V5 685_687delTTG
9 BRDN0000556267 pLX_TRC303 0% 99.5% 99.5% None 685_687delTTG
10 BRDN0000556265 pLX_TRC305 0% 99.5% 99.5% None 685_687delTTG
11 BRDN0000556269 pLX_TRC306 0% 99.5% 99.5% V5 685_687delTTG
12 BRDN0000556261 pLXI_TRC401 0% 99.5% 99.5% None 685_687delTTG
13 BRDN0000556287 pLXI_TRC402 0% 99.5% 99.5% HA 685_687delTTG
14 BRDN0000556264 pLX_TRC311 0% 99.5% 99.5% V5 685_687delTTG
15 BRDN0000556295 pLX_TRC312 0% 99.5% 99.5% V5 685_687delTTG
16 BRDN0000556268 pLX_TRC313 0% 99.5% 99.5% V5 685_687delTTG
17 BRDN0000556263 pLX_TRC314 0% 99.5% 99.5% V5 685_687delTTG
18 BRDN0000556284 pLX_TRC315 0% 99.5% 99.5% V5 685_687delTTG
19 BRDN0000556260 pLXI_TRC403 0% 99.5% 99.5% V5 685_687delTTG
20 ccsbBroad304_99988 pLX_TRC304 76.9% 69.8% 41.1% V5 (not translated due to prior stop codon) (many diffs)
21 BRDN0000464766 pDONR223 0% 99.5% 99.5% None 685_687delTTG
22 BRDN0000464767 pDONR223 0% 99.5% 99.5% None 685_687delTTG
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