TRC Screening Resources

Microarray Based Pooled Screening Files

Name Date Download
1 CDF for use with the TRC custom array 25 Feb 2010 zip
2 GENE-E chip file for use with the murine 40K pool 25 Feb 2010 chip
3 annotation of hairpins in the murine 40K pooll 25 Feb 2010 xls
4 GENE-E chip file for use with the human 45K pool (deprecated) 25 Feb 2010 chip
5 annotation of hairpins in the human 45K pool (deprecated) 25 Feb 2010 xls
6 GENE-E chip file for use with the human 55K pool 25 Feb 2010 chip
7 annotation of hairpins in the human 55K pool 25 Feb 2010 xls

Next-Gen Sequencing Based Pooled Screening Files

Name Date Download
1 GENE-E sequence mapping file for use with the murine 40K pool 16 Aug 2011 chip
2 annotation file for use with the murine 40K pool 25 Aug 2011 txt
3 GENE-E sequence mapping file for use with the human 55K pool 25 Aug 2011 chip
4 annotation file for use with the human 55K pool 25 Aug 2011 txt
5 GENE-E sequence mapping file for use with the human 98K pool 25 Aug 2011 chip
6 annotation file for use with the human 98K pool 25 Aug 2011 txt

Data from Luo et al. (2008). "Highly parallel identification of essential genes in cancer cells," Proc. Natl. Acad. Sci USA. 105:20380-20385.

Name Date Download
1 Luo et al., PNAS 2008 all screening data after normalization (gct format suitable for use in GENE-E and other tools) 23 December 2008 gct
2 Luo et al, PNAS 2008 file providing annotation of the columns of gct file 23 December 2008 sin
3 Luo et al., PNAS 2008 file providing mapping of hairpin ids to gene symbols for use in RIGER 23 December 2008 chip

Control Clones

Name Date Download
1 CTR01 shRNA characterization 20 May 2009 pdf

Software

Name Date Download
1 RNA Interference Gene Enrichment Ranking (RIGER) 9 Feb 2009 link
2 RNAeyes 3.3.1 18 Oct 2011 zip