TRC Screening Resources
Microarray Based Pooled Screening Files
| Name | Date | Download | |
|---|---|---|---|
| 1 | CDF for use with the TRC custom array | 25 Feb 2010 | zip |
| 2 | GENE-E chip file for use with the murine 40K pool | 25 Feb 2010 | chip |
| 3 | annotation of hairpins in the murine 40K pooll | 25 Feb 2010 | xls |
| 4 | GENE-E chip file for use with the human 45K pool (deprecated) | 25 Feb 2010 | chip |
| 5 | annotation of hairpins in the human 45K pool (deprecated) | 25 Feb 2010 | xls |
| 6 | GENE-E chip file for use with the human 55K pool | 25 Feb 2010 | chip |
| 7 | annotation of hairpins in the human 55K pool | 25 Feb 2010 | xls |
Next-Gen Sequencing Based Pooled Screening Files
| Name | Date | Download | |
|---|---|---|---|
| 1 | GENE-E sequence mapping file for use with the murine 40K pool | 20 Jul 2012 | chip |
| 2 | annotation file for use with the murine 40K pool | 20 Jul 2012 | txt |
| 3 | GENE-E sequence mapping file for use with the human 55K pool | 20 Jul 2012 | chip |
| 4 | annotation file for use with the human 55K pool | 20 Jul 2012 | txt |
| 5 | GENE-E sequence mapping file for use with the human 98K pool | 2 Aug 2012 | chip |
| 6 | annotation file for use with the human 98K pool | 2 Aug 2012 | txt |
Data from Luo et al. (2008). "Highly parallel identification of essential genes in cancer cells," Proc. Natl. Acad. Sci USA. 105:20380-20385.
| Name | Date | Download | |
|---|---|---|---|
| 1 | Luo et al., PNAS 2008 all screening data after normalization (gct format suitable for use in GENE-E and other tools) | 23 December 2008 | gct |
| 2 | Luo et al, PNAS 2008 file providing annotation of the columns of gct file | 23 December 2008 | sin |
| 3 | Luo et al., PNAS 2008 file providing mapping of hairpin ids to gene symbols for use in RIGER | 23 December 2008 | chip |
Control Clones
| Name | Date | Download | |
|---|---|---|---|
| 1 | CTR01 shRNA characterization | 20 May 2009 |