Gene: HcRed

Identifier:
Hahn Lab -41
Official symbol:
HcRed
Description:
HcRed
Taxon:
CONTROL
Chromosome:
n/a
Wildtype Transcripts:
HcRed.1

shRNA constructs with 100% match to this gene

Matching is performed using the Specificity-Defining Region (SDR)[?] of the shRNAs. This list includes matches to any current transcript from gene -41 (HcRed), regardless of what transcript the shRNAs were originally designed to target. For example, some shRNAs in this list may have been originally designed to target: (i) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (ii) a transcript of a different gene from the same or different taxon.

No results found.

shRNA constructs with at least a near match to this gene

This list includes shRNAs that have a >84% (16 of 19 bases) SDR[?] match to transcripts from gene -41 (HcRed), regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (ii) a transcript of a different gene from the same or different taxon.

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shRNA constructs originally designed to target this gene, but which may no longer match it

No results found.

ORF constructs matching current transcripts from this gene

Clone ID Taxon Transcript Gene Symbol DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Note
1 BRDN0000464765 CONTROL HcRed.1 -41 HcRed pDONR223 0% 99.5% 99.5% None 685_687delTTG
2 ccsbBroad301_99989 CONTROL HcRed.1 -41 HcRed pLX_TRC301 0% 99.5% 99.5% None 685_687delTTG
3 ccsbBroad301_99990 CONTROL HcRed.1 -41 HcRed pLX_TRC301 0% 99.5% 99.5% None 685_687delTTG
4 ccsbBroad301_99988 CONTROL HcRed.1 -41 HcRed pLX_TRC301 0% 99.5% 99.5% None 685_687delTTG
5 ccsbBroad301_99981 CONTROL HcRed.1 -41 HcRed pLX_TRC301 0% 99.5% 99.5% None 685_687delTTG
6 ccsbBroad304_99990 CONTROL HcRed.1 -41 HcRed pLX_TRC304 75.8% 99.5% 99.5% V5 685_687delTTG
7 BRDN0000559442 CONTROL HcRed.1 -41 HcRed pLX_TRC307 0% 99.5% 99.5% V5 685_687delTTG
8 BRDN0000464778 CONTROL HcRed.1 -41 HcRed pLX_TRC302 0% 99.5% 99.5% V5 685_687delTTG
9 BRDN0000556267 CONTROL HcRed.1 -41 HcRed pLX_TRC303 0% 99.5% 99.5% None 685_687delTTG
10 BRDN0000556265 CONTROL HcRed.1 -41 HcRed pLX_TRC305 0% 99.5% 99.5% None 685_687delTTG
11 BRDN0000556269 CONTROL HcRed.1 -41 HcRed pLX_TRC306 0% 99.5% 99.5% V5 685_687delTTG
12 BRDN0000556261 CONTROL HcRed.1 -41 HcRed pLXI_TRC401 0% 99.5% 99.5% None 685_687delTTG
13 BRDN0000556287 CONTROL HcRed.1 -41 HcRed pLXI_TRC402 0% 99.5% 99.5% HA 685_687delTTG
14 BRDN0000556264 CONTROL HcRed.1 -41 HcRed pLX_TRC311 0% 99.5% 99.5% V5 685_687delTTG
15 BRDN0000556295 CONTROL HcRed.1 -41 HcRed pLX_TRC312 0% 99.5% 99.5% V5 685_687delTTG
16 BRDN0000556268 CONTROL HcRed.1 -41 HcRed pLX_TRC313 0% 99.5% 99.5% V5 685_687delTTG
17 BRDN0000556263 CONTROL HcRed.1 -41 HcRed pLX_TRC314 0% 99.5% 99.5% V5 685_687delTTG
18 BRDN0000556284 CONTROL HcRed.1 -41 HcRed pLX_TRC315 0% 99.5% 99.5% V5 685_687delTTG
19 BRDN0000556260 CONTROL HcRed.1 -41 HcRed pLXI_TRC403 0% 99.5% 99.5% V5 685_687delTTG
20 ccsbBroad304_99988 CONTROL HcRed.1 -41 HcRed pLX_TRC304 76.9% 69.8% 41.1% V5 (not translated due to prior stop codon) (many diffs)
21 BRDN0000464766 CONTROL HcRed.1 -41 HcRed pDONR223 0% 99.5% 99.5% None 685_687delTTG
22 BRDN0000464767 CONTROL HcRed.1 -41 HcRed pDONR223 0% 99.5% 99.5% None 685_687delTTG
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