Construct: shRNA TRCN0000231716

Construct Description:

Construct Type:
shRNA
Other Identifiers:
lacZ_656s21c1
DNA Barcode:
CGACCACGCAAATCAGCGATT

Original Target:

Taxon:
Control
Gene:
lacZ (-15)
Gene Description:
lacZ
Transcript:
Broad lacZ.1 (CURRENT)
Match location:
Position 656 (CDS)

Vector Information:

Vector Backbone:
pLKO_TRC005
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000231716)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this hairpin:

Taxon Gene Symbol Description Transcript SDR Match %[?] Region Start Pos.[?] Intrinsic Score[?] Adjusted Score[?]
1 CONTROL -15 lacZ lacZ lacZ.1 100% CDS 656 4.050 N/A
2 CONTROL -42 LacZ Hahn Lab LacZ LacZ.1 89% CDS 641 N/A N/A
3 human 491 ATP2B2 ATPase, Ca++ transporting, ... NM_001001331.2 85% CDS 4102 N/A N/A
4 human 491 ATP2B2 ATPase, Ca++ transporting, ... NM_001683.3 85% CDS 3967 N/A N/A
Download CSV

Sequence Information

Target Sequence:
CGACCACGCAAATCAGCGATT
Hairpin Sequence:
5'-CCGG-CGACCACGCAAATCAGCGATT-CTCGAG-AATCGCTGATTTGCGTGGTCG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCGACCACGCAAATCAGCGATTCTCGAGAATCGCTGATTTGCGTGGTCGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACGACCACGCAAATCAGCGATTCTCGAGAATCGCTGATTTGCGTGGTCG-3'

Other clones with same target sequence:

  1. TRCN0000072233