Construct: shRNA TRCN0000231692

Construct Description:

Construct Type:
shRNA
Other Identifiers:
rfp_612s21c1
DNA Barcode:
CAACGAGGACTACACCATCGT

Original Target:

Taxon:
Control
Gene:
RFP (RFP)
Gene Description:
RFP
Transcript:
Broad rfp.1 (CURRENT)
Match location:
Position 612 (CDS)

Vector Information:

Vector Backbone:
pLKO_TRC005
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000231692)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this hairpin:

Taxon Gene Symbol Description Transcript SDR Match %[?] Region Start Pos.[?] Intrinsic Score[?] Adjusted Score[?]
1 CONTROL RFP RFP RFP rfp.1 100% CDS 612 2.640 N/A
2 human 9902 MRC2 mannose receptor C type 2 NM_006039.4 89% CDS 918 N/A N/A
3 human 9902 MRC2 mannose receptor C type 2 XM_011525543.2 89% CDS 649 N/A N/A
4 human 9902 MRC2 mannose receptor C type 2 XR_934628.2 89% 3UTR 649 N/A N/A
5 mouse 105841 Dennd3 DENN/MADD domain containing 3 NM_001081066.1 85% CDS 591 N/A N/A
6 mouse 105841 Dennd3 DENN/MADD domain containing 3 XR_383965.1 85% 3UTR 586 N/A N/A
Download CSV

Sequence Information

Target Sequence:
CAACGAGGACTACACCATCGT
Hairpin Sequence:
5'-CCGG-CAACGAGGACTACACCATCGT-CTCGAG-ACGATGGTGTAGTCCTCGTTG-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGCAACGAGGACTACACCATCGTCTCGAGACGATGGTGTAGTCCTCGTTGTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAACAACGAGGACTACACCATCGTCTCGAGACGATGGTGTAGTCCTCGTTG-3'

Other clones with same target sequence:

  1. TRCN0000072217