Construct: shRNA TRCN0000222803

Construct Description:

Construct Type:
shRNA
Other Identifiers:
turboGfp-170s1c1
DNA Barcode:
ACCTGCTGAGCCACGTGATGG
Vector:
pLKO.1

Original Target:

Taxon:
CONTROL
Gene:
evrogen tGFP
Gene Description:
turboGfp
Transcript:
evrogen turboGfp.1 (CURRENT)
Match location:
Position 170 (CDS)

Current transcripts matched by this hairpin:

Taxon Gene Symbol Description Transcript SDR Match %[?] Region Start Pos.[?] Intrinsic Score[?] Adjusted Score[?]
1 CONTROL -11 tGFP turboGfp turboGfp.1 100% CDS 170 0.000 N/A
2 human 221 ALDH3B1 aldehyde dehydrogenase 3 fa... NM_001161473.2 89% 5UTR 1 N/A N/A
3 human 144132 DNHD1 dynein heavy chain domain 1 NM_144666.2 89% CDS 13928 N/A N/A
4 mouse 19766 Ripk1 receptor (TNFRSF)-interacti... NM_009068.3 89% CDS 2070 N/A N/A
5 mouse 19766 Ripk1 receptor (TNFRSF)-interacti... XM_006516607.1 89% CDS 2947 N/A N/A
6 mouse 19766 Ripk1 receptor (TNFRSF)-interacti... XM_006516608.1 89% CDS 4028 N/A N/A
7 mouse 19766 Ripk1 receptor (TNFRSF)-interacti... XM_006516609.1 89% CDS 2122 N/A N/A
8 mouse 74748 Slamf8 SLAM family member 8 NM_029084.3 89% 3UTR 1024 N/A N/A
9 mouse 74748 Slamf8 SLAM family member 8 XM_006497009.1 89% 3UTR 1342 N/A N/A
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Sequence Information

Target Sequence:
ACCTGCTGAGCCACGTGATGG
Hairpin Sequence:
5'-CCGG-ACCTGCTGAGCCACGTGATGG-CTCGAG-CCATCACGTGGCTCAGCAGGT-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGACCTGCTGAGCCACGTGATGGCTCGAGCCATCACGTGGCTCAGCAGGTTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAACCTGCTGAGCCACGTGATGGCTCGAGCCATCACGTGGCTCAGCAGGT-3'

Other clones with same target sequence:

(none)