Construct: shRNA TRCN0000180751

Construct Description:

Construct Type:
shRNA
Other Identifiers:
NM_004704.2-1281s1c1
DNA Barcode:
GCTTGACCTTCTCTGTGACAT

Original Target:

Taxon:
Homo sapiens (human)
Gene:
RRP9 (9136)
Gene Description:
ribosomal RNA processing 9, U3 small nucleolar RNA binding protein
Transcript:
RefSeq NM_004704.2 (NON-CURRENT)
Match location:
Position 1281 (CDS)

Vector Information:

Vector Backbone:
pLKO.1
Pol II Cassette 1:
PGK-PuroR
Pol II Cassette 2:
n/a
Pol III Promoter:
constitutive hU6
Pol III Insert:
(TRCN0000180751)
Selection Marker:
PuroR
Visible Reporter:
n/a

Current transcripts matched by this shRNA:

Sequence Information

Target Sequence:
GCTTGACCTTCTCTGTGACAT
Hairpin Sequence:
5'-CCGG-GCTTGACCTTCTCTGTGACAT-CTCGAG-ATGTCACAGAGAAGGTCAAGC-TTTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGGCTTGACCTTCTCTGTGACATCTCGAGATGTCACAGAGAAGGTCAAGCTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAGCTTGACCTTCTCTGTGACATCTCGAGATGTCACAGAGAAGGTCAAGC-3'

Other clones with same target sequence:

(none)