Construct: shRNA TRCN0000072181

Construct Description:

Construct Type:
shRNA
Other Identifiers:
clonetechGfp_437s1c1
DNA Barcode:
ACAACAGCCACAACGTCTATA
Vector:
pLKO.1

Original Target:

Taxon:
Control
Gene:
GFP (-10)
Gene Description:
clonetechGfp
Transcript:
clonetech clonetechGfp.1 (CURRENT)
Match location:
Position 437 (CDS)

Current transcripts matched by this hairpin:

Taxon Gene Symbol Description Transcript SDR Match %[?] Region Start Pos.[?] Intrinsic Score[?] Adjusted Score[?]
1 CONTROL -10 GFP clonetechGfp clonetechGfp.1 100% CDS 437 13.200 N/A
2 CONTROL -40 BFP BFP BFP.1 95% CDS 437 N/A N/A
3 CONTROL -44 eGFP eGFP eGFP.1 100% CDS 437 13.200 N/A
4 human 5794 PTPRH protein tyrosine phosphatas... NM_001161440.2 85% CDS 308 N/A N/A
5 human 5794 PTPRH protein tyrosine phosphatas... NM_002842.4 85% CDS 308 N/A N/A
6 human 5794 PTPRH protein tyrosine phosphatas... XM_006723312.1 85% CDS 301 N/A N/A
7 human 219285 SAMD9L sterile alpha motif domain ... NM_152703.2 85% 3UTR 7002 N/A N/A
8 human 219285 SAMD9L sterile alpha motif domain ... XM_005250191.1 85% 3UTR 6635 N/A N/A
9 human 219285 SAMD9L sterile alpha motif domain ... XM_005250193.1 85% 3UTR 6430 N/A N/A
10 human 219285 SAMD9L sterile alpha motif domain ... XM_006715888.1 85% 3UTR 6806 N/A N/A
11 human 219285 SAMD9L sterile alpha motif domain ... XM_006715889.1 85% 3UTR 6371 N/A N/A
12 human 219285 SAMD9L sterile alpha motif domain ... XM_006715890.1 85% 3UTR 5824 N/A N/A
13 mouse 239420 Csmd3 CUB and Sushi multiple doma... NM_001081391.2 89% 5UTR 25 N/A N/A
14 mouse 239420 Csmd3 CUB and Sushi multiple doma... XM_006520909.1 89% 5UTR 211 N/A N/A
15 mouse 239420 Csmd3 CUB and Sushi multiple doma... XM_006520910.1 89% 5UTR 211 N/A N/A
16 mouse 239420 Csmd3 CUB and Sushi multiple doma... XM_006520911.1 89% 5UTR 210 N/A N/A
17 mouse 239420 Csmd3 CUB and Sushi multiple doma... XM_006520913.1 89% 5UTR 224 N/A N/A
18 mouse 239420 Csmd3 CUB and Sushi multiple doma... XM_006520914.1 89% 5UTR 224 N/A N/A
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Sequence Information

Target Sequence:
ACAACAGCCACAACGTCTATA
Hairpin Sequence:
5'-CCGG-ACAACAGCCACAACGTCTATA-CTCGAG-TATAGACGTTGTGGCTGTTGT-TTTTTG-3'

Oligo design for arrayed cloning:

Forward sequence:
5'-CCGGACAACAGCCACAACGTCTATACTCGAGTATAGACGTTGTGGCTGTTGTTTTTTG-3'
Reverse sequence:
5'-AATTCAAAAAACAACAGCCACAACGTCTATACTCGAGTATAGACGTTGTGGCTGTTGT-3'

Other clones with same target sequence:

  1. TRCN0000231753
  2. TRCN0000559393
  3. TRCN0000559394
  4. TRCN0000559395
  5. TRCN0000559396
  6. TRCN0000559397
  7. TRCN0000559399
  8. TRCN0000559401
  9. TRCN0000559403
  10. TRCN0000559407
  11. TRCN0000559408