Sources

The sequences and where we downloaded them are listed below. Please use appropriate references when citing this sources.


SpeciesSourceDate
S. cerevisiae   AA   NTSGDOctober, 2008
S. paradoxus   AA   NTFungal Comparative GenomicsOctober, 2008
S. mikatae   AA   NTFungal Comparative GenomicsOctober, 2008
S. bayanus   AA   NTFungal Comparative GenomicsOctober, 2008
C. glabrata   AA   NTGenolevuresOctober, 2008
S. castellii   AA   NTSGDOctober, 2008
K. lactis   AA   NTGenolevuresOctober, 2008
S. kluyveri   AA   NTGenolevuresOctober, 2008
A. gossypii   AA   NTAshbya Genome DatabaseMay, 2007
K. waltii   AA   NTKellis et alJune, 2004
D. hansenii   AA   NTGenolevuresOctober, 2008
C. guilliermondii   AA   NTBroad Fungal Genome InitiativeOctober, 2008
C. lusitaniae   AA   NTBroad Fungal Genome InitiativeOctober, 2008
C. parapsilosis   AA   NTBroad Fungal Genome InitiativeOctober, 2008
L. elongosporus   AA   NTBroad Fungal Genome InitiativeOctober, 2008
C. tropicalis   AA   NTBroad Fungal Genome InitiativeOctober, 2008
C. albicans   AA   NTCGDNovember, 2008
Y. lipolytica   AA   NTGenolevuresOctober, 2008
A. nidulans   AA   NTBroad Fungal Genome InitiativeOctober, 2008
N. crassa   AA   NTBroad Fungal Genome InitiativeOctober, 2008
S. octosporus   AA   NTBroad Fungal Genome InitiativeOctober, 2008
S. japonicus   AA   NTBroad Fungal Genome InitiativeOctober, 2008
S. pombe   AA   NTGene DBOctober, 2008

The orthology assignments that was used between S. cerevisaie, C. glabrata, S. castellii, K. lactis, A. gossypii and K. waltii came from:

Byrne & Wolfe, The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species, Genome Research 2005 Oct;15(10):1456-61

The curated orthology assignments between S. cerevisaie and S. pombe are from:

V. Wood, Schizosaccharomyces pombe comparative genomics; from sequence to systems. In: Comparative Genomics using fungi as models (P. Sunnerhagen, J. Piskur, eds.) Topics in Current Genetics vol 15, pp 233- 285 (2006)
The assignments from September, 2008 were used here.