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2014
Allele-specific methylation occurs at genetic variants associated with complex disease.Hutchinson, JN, Raj T., Fagerness J., Stahl E., Viloria FT, Gimelbrant A., Seddon J., Daly M., Chess A., and Plenge R. PloS one, 2014/01/01, Volume 9, Issue 6, p.e98464, (2014) Read More / View Supplemental Materials
Abstract
Analysis of gene-gene interactions among common variants in coronary artery disease.Musameh, M., Wang W., Nelson C., Lluís-Ganella C., Subirana I., Elosua R., Hall A., Kathiresan S., Samani N., and Tomaszewski M. Heart, lung & circulation, 2014/01/01, Volume 23 Suppl 2, p.e19, (2014) Read More / View Supplemental Materials
Analysis of the Effects of Five Factors Relevant to In Vitro Chondrogenesis of Human Mesenchymal Stem Cells Using Factorial Design and High Throughput mRNA-Profiling.Jakobsen, RB, Ostrup E., Zhang X., Mikkelsen TS, and Brinchmann JE PloS one, 2014/01/01, Volume 9, Issue 5, p.e96615, (2014) Read More / View Supplemental Materials
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CELLCOUNTER: Novel Open-Source Software for Counting Cell Migration and Invasion In Vitro.Li, X., Yang H., Huang H., and Zhu T. BioMed research international, 2014/01/01, Volume 2014, p.863564, (2014) Read More / View Supplemental Materials
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Comorbidity of Severe Psychotic Disorders With Measures of Substance Use.Hartz, SM, Pato CN, Medeiros H., Cavazos-Rehg P., Sobell JL, Knowles JA, Bierut LJ, Pato MT, for the Genomic Psychiatry Cohort Consortium, Abbott C., Azevedo MH, Belliveau R., Bevilacqua E., Bromet EJ, Buckley PF, Dewan MJ, Escamilla MA, Fanous AH, Fochtmann LJ, Kinkead R., et al. JAMA psychiatry, 2014/01/01, (2014) Read More / View Supplemental Materials
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Comparison of illumina and 454 deep sequencing in participants failing raltegravir-based antiretroviral therapy.Li, JZ, Chapman B., Charlebois P., Hofmann O., Weiner B., Porter AJ, Samuel R., Vardhanabhuti S., Zheng L., Eron J., Taiwo B., Zody MC, Henn MR, Kuritzkes DR, Hide W., ACTG A5262 Study Team, Wilson CC, Berzins BI, Acosta EP, Bastow B., et al. PloS one, 2014/01/01, Volume 9, Issue 3, p.e90485, (2014) Read More / View Supplemental Materials
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Comprehensive functional annotation of 77 prostate cancer risk Loci.Hazelett, DJ, Rhie SK, Gaddis M., Yan C., Lakeland DL, Coetzee SG, consortium Ellipse/GAME-ON, consortium Practical, Henderson BE, Noushmehr H., Cozen W., Kote-Jarai Z., Eeles RA, Easton DF, Haiman CA, Lu W., Farnham PJ, and Coetzee GA PLoS genetics, 2014/01/01, Volume 10, Issue 1, p.e1004102, (2014) Read More / View Supplemental Materials
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Construction and application of a korean reference panel for imputing classical alleles and amino acids of human leukocyte antigen genes.Kim, K., Bang SY, Lee HS, and Bae SC PloS one, 2014/01/01, Volume 9, Issue 11, p.e112546, (2014) Read More / View Supplemental Materials
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CRISPRseek: A Bioconductor Package to Identify Target-Specific Guide RNAs for CRISPR-Cas9 Genome-Editing Systems.Zhu, LJ, Holmes BR, Aronin N., and Brodsky MH PloS one, 2014/01/01, Volume 9, Issue 9, p.e108424, (2014) Read More / View Supplemental Materials
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Cytoscape: the network visualization tool for GenomeSpace workflows.Demchak, B., Hull T., Reich M., Liefeld T., Smoot M., Ideker T., and Mesirov J. P. F1000Research, 2014/01/01, Volume 3, p.151, (2014) Read More / View Supplemental Materials
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A Description of the Molecular Signatures Database (MSigDB) Web Site.Liberzon, A. Methods in molecular biology (Clifton, N.J.), 2014/01/01, Volume 1150, p.153-60, (2014) Read More / View Supplemental Materials
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Dopamine genetic risk score predicts depressive symptoms in healthy adults and adults with depression.Pearson-Fuhrhop, KM, Dunn EC, Mortero S., Devan WJ, Falcone GJ, Lee P., Holmes AJ, Hollinshead MO, Roffman JL, Smoller JW, Rosand J., and Cramer SC PloS one, 2014/01/01, Volume 9, Issue 5, p.e93772, (2014) Read More / View Supplemental Materials
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Efficient Mutagenesis by Cas9 Protein-Mediated Oligonucleotide Insertion and Large-Scale Assessment of Single-Guide RNAs.Gagnon, JA, Valen E., Thyme SB, Huang P., Ahkmetova L., Pauli A., Montague TG, Zimmerman S., Richter C., and Schier AF PloS one, 2014/01/01, Volume 9, Issue 5, p.e98186, (2014) Read More / View Supplemental Materials
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Evidence that duplications of 22q11.2 protect against schizophrenia.Rees, E., Kirov G., Sanders A., Walters JT, Chambert KD, Shi J., Szatkiewicz J., O'Dushlaine C., Richards AL, Green EK, Jones I., Davies G., Legge SE, Moran JL, Pato C., Pato M., Genovese G., Levinson D., Duan J., Moy W., et al. Molecular psychiatry, 2014/01/01, Volume 19, Issue 1, p.37-40, (2014) Read More / View Supplemental Materials
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Gene-wide analysis detects two new susceptibility genes for Alzheimer's disease.Escott-Price, V., Bellenguez C., Wang LS, Choi SH, Harold D., Jones L., Holmans P., Gerrish A., Vedernikov A., Richards A., Destefano AL, Lambert JC, Ibrahim-Verbaas CA, Naj AC, Sims R., Jun G., Bis JC, Beecham GW, Grenier-Boley B., Russo G., et al. PloS one, 2014/01/01, Volume 9, Issue 6, p.e94661, (2014) Read More / View Supplemental Materials
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Genetics and epigenetics of gliomas.Suvà, ML Swiss medical weekly, 2014/01/01, Volume 144, p.w14018, (2014) Read More / View Supplemental Materials
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Genome editing using cas9 nickases.Trevino, AE, and Zhang F. Methods in enzymology, 2014/01/01, Volume 546, p.161-74, (2014) Read More / View Supplemental Materials
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Genome-wide association studies to advance our understanding of critical cell types and pathways in rheumatoid arthritis: recent findings and challenges.Diogo, D., Okada Y., and Plenge RM Current opinion in rheumatology, 2014/01/01, Volume 26, Issue 1, p.85-92, (2014) Read More / View Supplemental Materials
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Gut Microbiota and the Paradox of Cancer Immunotherapy.Poutahidis, T., Kleinewietfeld M., and Erdman SE Frontiers in immunology, 2014/01/01, Volume 5, p.157, (2014) Read More / View Supplemental Materials
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High content image analysis identifies novel regulators of synaptogenesis in a high-throughput RNAi screen of primary neurons.Nieland, TJ, Logan DJ, Saulnier J., Lam D., Johnson C., Root DE, Carpenter AE, and Sabatini BL PloS one, 2014/01/01, Volume 9, Issue 3, p.e91744, (2014) Read More / View Supplemental Materials
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High risk population isolate reveals low frequency variants predisposing to intracranial aneurysms.Kurki, MI, Gaál EI, Kettunen J., Lappalainen T., Menelaou A., Anttila V., van 't Hof FN, von Und Zu Fraunberg M., Helisalmi S., Hiltunen M., Lehto H., Laakso A., Kivisaari R., Koivisto T., Ronkainen A., Rinne J., Kiemeney LA, Vermeulen SH, Kaunisto MA, Eriksson JG, et al. PLoS genetics, 2014/01/01, Volume 10, Issue 1, p.e1004134, (2014) Read More / View Supplemental Materials
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Identification of ALK Gene Alterations in Urothelial Carcinoma.Bellmunt, J., Selvarajah S., Rodig S., Salido M., de Muga S., Costa I., Bellosillo B., Werner L., Mullane S., Fay AP, O'Brien R., Barretina J., Minoche AE, Signoretti S., Montagut C., Himmelbauer H., Berman DM, Kantoff P., Choueiri TK, and Rosenberg JE PloS one, 2014/01/01, Volume 9, Issue 8, p.e103325, (2014) Read More / View Supplemental Materials
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An Image-Based Genetic Assay Identifies Genes in T1D Susceptibility Loci Controlling Cellular Antiviral Immunity in Mouse.Liao, J., Jijon HB, Kim IR, Goel G., Doan A., Sokol H., Bauer H., Herrmann BG, Lassen KG, and Xavier RJ PloS one, 2014/01/01, Volume 9, Issue 9, p.e108777, (2014) Read More / View Supplemental Materials
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An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts.Hoeppner, MP, Lundquist A., Pirun M., Meadows JR, Zamani N., Johnson J., Sundström G., Cook A., FitzGerald MG, Swofford R., Mauceli E., Moghadam BT, Greka A., Alföldi J., Abouelleil A., Aftuck L., Bessette D., Berlin A., Brown A., Gearin G., et al. PloS one, 2014/01/01, Volume 9, Issue 3, p.e91172, (2014) Read More / View Supplemental Materials
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Integration of Sequence Data from a Consanguineous Family with Genetic Data from an Outbred Population Identifies PLB1 as a Candidate Rheumatoid Arthritis Risk Gene.Okada, Y., Diogo D., Greenberg JD, Mouassess F., Achkar WA, Fulton RS, Denny JC, Gupta N., Mirel D., Gabriel S., Li G., Kremer JM, Pappas DA, Carroll RJ, Eyler AE, Trynka G., Stahl EA, Cui J., Saxena R., Coenen MJ, et al. PloS one, 2014/01/01, Volume 9, Issue 2, p.e87645, (2014) Read More / View Supplemental Materials
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Intestinal microbiota of preterm infants differ over time and between hospitals.Taft, DH, Ambalavanan N., Schibler KR, Yu Z., Newburg DS, Ward DV, and Morrow AL Microbiome, 2014/01/01, Volume 2, p.36, (2014) Read More / View Supplemental Materials
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Joint modeling and registration of cell populations in cohorts of high-dimensional flow cytometric data.Pyne, S., Lee SX, Wang K., Irish J., Tamayo P., Nazaire MD, Duong T., Ng SK, Hafler D., Levy R., Nolan GP, Mesirov J., and McLachlan GJ PloS one, 2014/01/01, Volume 9, Issue 7, p.e100334, (2014) Read More / View Supplemental Materials
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Lack of evidence for a role of islet autoimmunity in the aetiology of canine diabetes mellitus.Ahlgren, KM, Fall T., Landegren N., Grimelius L., von Euler H., Sundberg K., Lindblad-Toh K., Lobell A., Hedhammar A., Andersson G., Hansson-Hamlin H., Lernmark A., and Kämpe O. PloS one, 2014/01/01, Volume 9, Issue 8, p.e105473, (2014) Read More / View Supplemental Materials
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Large-scale genome-wide association studies and meta-analyses of longitudinal change in adult lung function.Tang, W., Kowgier M., Loth DW, Soler Artigas M., Joubert BR, Hodge E., Gharib SA, Smith AV, Ruczinski I., Gudnason V., Mathias RA, Harris TB, Hansel NN, Launer LJ, Barnes KC, Hansen JG, Albrecht E., Aldrich MC, Allerhand M., Barr RG, et al. PloS one, 2014/01/01, Volume 9, Issue 7, p.e100776, (2014) Read More / View Supplemental Materials
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Laser microdissection of the alveolar duct enables single-cell genomic analysis.Bennett, RD, Ysasi AB, Belle JM, Wagner WL, Konerding MA, Blainey PC, Pyne S., and Mentzer SJ Frontiers in oncology, 2014/01/01, Volume 4, p.260, (2014) Read More / View Supplemental Materials
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Long-range correlation properties in timing of skilled piano performance: the influence of auditory feedback and deep brain stimulation.Herrojo Ruiz, M., Hong SB, Hennig H., Altenmüller E., and Kühn AA Frontiers in psychology, 2014/01/01, Volume 5, p.1030, (2014) Read More / View Supplemental Materials
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Massively parallel sequencing of human urinary exosome/microvesicle RNA reveals a predominance of non-coding RNA.Miranda, KC, Bond DT, Levin JZ, Adiconis X., Sivachenko A., Russ C., Brown D., Nusbaum C., and Russo LM PloS one, 2014/01/01, Volume 9, Issue 5, p.e96094, (2014) Read More / View Supplemental Materials
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Meta-Analysis Identifies Gene-by-Environment Interactions as Demonstrated in a Study of 4,965 Mice.Kang, EY, Han B., Furlotte N., Joo JW, Shih D., Davis RC, Lusis AJ, and Eskin E. PLoS genetics, 2014/01/01, Volume 10, Issue 1, p.e1004022, (2014) Read More / View Supplemental Materials
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MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping.Lee, WP, Stromberg MP, Ward A., Stewart C., Garrison EP, and Marth GT PloS one, 2014/01/01, Volume 9, Issue 3, p.e90581, (2014) Read More / View Supplemental Materials
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Mu-8: visualizing differences between proteins and their families.Mercer, JD, Pandian B., Lex A., Bonneel N., and Pfister H. BMC proceedings, 2014/01/01, Volume 8, Issue Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica, p.S5, (2014) Read More / View Supplemental Materials
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New Approaches to Target T-ALL.Roti, G., and Stegmaier K. Frontiers in oncology, 2014/01/01, Volume 4, p.170, (2014) Read More / View Supplemental Materials
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OTX2 Duplication Is Implicated in Hemifacial Microsomia.Zielinski, D., Markus B., Sheikh M., Gymrek M., Chu C., Zaks M., Srinivasan B., Hoffman JD, Aizenbud D., and Erlich Y. PloS one, 2014/01/01, Volume 9, Issue 5, p.e96788, (2014) Read More / View Supplemental Materials
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A Pan-Cancer Analysis of Transcriptome Changes Associated with Somatic Mutations in U2AF1 Reveals Commonly Altered Splicing Events.Brooks, AN, Choi PS, de Waal L., Sharifnia T., Imielinski M., Saksena G., Pedamallu CS, Sivachenko A., Rosenberg M., Chmielecki J., Lawrence MS, Deluca DS, Getz G., and Meyerson M. PloS one, 2014/01/01, Volume 9, Issue 1, p.e87361, (2014) Read More / View Supplemental Materials
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Pathway analyses implicate glial cells in schizophrenia.Duncan, LE, Holmans PA, Lee PH, O'Dushlaine CT, Kirby AW, Smoller JW, Öngür D., and Cohen BM PloS one, 2014/01/01, Volume 9, Issue 2, p.e89441, (2014) Read More / View Supplemental Materials
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Personal neoantigen cancer vaccines: The momentum builds.Fritsch, EF, Hacohen N., and Wu CJ Oncoimmunology, 2014/01/01, Volume 3, p.e29311, (2014) Read More / View Supplemental Materials
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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Walker, BJ, Abeel T., Shea T., Priest M., Abouelliel A., Sakthikumar S., Cuomo CA, Zeng Q., Wortman J., Young SK, and Earl AM PloS one, 2014/01/01, Volume 9, Issue 11, p.e112963, (2014) Read More / View Supplemental Materials
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Quantitative-proteomic comparison of alpha and Beta cells to uncover novel targets for lineage reprogramming.Choudhary, A., Hu He K., Mertins P., Udeshi ND, Dančík V., Fomina-Yadlin D., Kubicek S., Clemons PA, Schreiber SL, Carr SA, and Wagner BK PloS one, 2014/01/01, Volume 9, Issue 4, p.e95194, (2014) Read More / View Supplemental Materials
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Rare deleterious mutations of the gene EFR3A in autism spectrum disorders.Gupta, AR, Pirruccello M., Cheng F., Kang HJ, Fernandez TV, Baskin JM, Choi M., Liu L., Ercan-Sencicek AG, Murdoch JD, Klei L., Neale BM, Franjic D., Daly M. J., Lifton RP, De Camilli P., Zhao H., Sestan N., and State MW Molecular autism, 2014/01/01, Volume 5, p.31, (2014) Read More / View Supplemental Materials
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Re-sequencing Expands Our Understanding of the Phenotypic Impact of Variants at GWAS Loci.Service, SK, Teslovich TM, Fuchsberger C., Ramensky V., Yajnik P., Koboldt DC, Larson DE, Zhang Q., Lin L., Welch R., Ding L., McLellan MD, O'Laughlin M., Fronick C., Fulton LL, Magrini V., Swift A., Elliott P., Jarvelin MR, Kaakinen M., et al. PLoS genetics, 2014/01/01, Volume 10, Issue 1, p.e1004147, (2014) Read More / View Supplemental Materials
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Revitalizing psychiatric therapeutics.Hyman, SE Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology, 2014/01/01, Volume 39, Issue 1, p.220-9, (2014) Read More / View Supplemental Materials
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RNA-Guided Genome Editing of Mammalian Cells.Pyzocha, NK, Ran FA, Hsu PD, and Zhang F. Methods in molecular biology (Clifton, N.J.), 2014/01/01, Volume 1114, p.269-77, (2014) Read More / View Supplemental Materials
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Rs964184 (APOA5-A4-C3-A1) Is Related to Elevated Plasma Triglyceride Levels, but Not to an Increased Risk for Vascular Events in Patients with Clinically Manifest Vascular Disease.van de Woestijne, AP, van der Graaf Y., de Bakker PI, Asselbergs FW, Spiering W., Visseren FL, and SMART Study Group PloS one, 2014/01/01, Volume 9, Issue 6, p.e101082, (2014) Read More / View Supplemental Materials
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Selective HDAC inhibition for the disruption of latent HIV-1 infection.Barton, KM, Archin NM, Keedy KS, Espeseth AS, Zhang YL, Gale J., Wagner FF, Holson EB, and Margolis DM PloS one, 2014/01/01, Volume 9, Issue 8, p.e102684, (2014) Read More / View Supplemental Materials
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A Simple Repeat Polymorphism in the MITF-M Promoter Is a Key Regulator of White Spotting in Dogs.Baranowska Körberg, I., Sundström E., Meadows JR, Rosengren Pielberg G., Gustafson U., Hedhammar A., Karlsson EK, Seddon J., Söderberg A., Vilà C., Zhang X., Akesson M., Lindblad-Toh K., Andersson G., and Andersson L. PloS one, 2014/01/01, Volume 9, Issue 8, p.e104363, (2014) Read More / View Supplemental Materials
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Src Mutation Induces Acquired Lapatinib Resistance in ERBB2-Amplified Human Gastroesophageal Adenocarcinoma Models.Hong, YS, Kim J., Pectasides E., Fox C., Hong SW, Ma Q., Wong GS, Peng S., Stachler MD, Thorner AR, Van Hummelen P., and Bass AJ PloS one, 2014/01/01, Volume 9, Issue 10, p.e109440, (2014) Read More / View Supplemental Materials
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Standardized metadata for human pathogen/vector genomic sequences.Dugan, VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I., Ward DV, Yao A., Zheng J., Barrett T., Birren B., Brinkac L., Bruno VM, Caler E., Chapman S., et al. PloS one, 2014/01/01, Volume 9, Issue 6, p.e99979, (2014) Read More / View Supplemental Materials
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Understanding the sequence requirements of protein families: insights from the BioVis 2013 contests.Ray, WC, Rumpf RW, Sullivan B., Callahan N., Magliery T., Machiraju R., Wong B., Krzywinski M., and Bartlett CW BMC proceedings, 2014/01/01, Volume 8, Issue Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica, p.S1, (2014) Read More / View Supplemental Materials
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ZBED6 Modulates the Transcription of Myogenic Genes in Mouse Myoblast Cells.Jiang, L., Wallerman O., Younis S., Rubin CJ, Gilbert ER, Sundström E., Ghazal A., Zhang X., Wang L., Mikkelsen TS, Andersson G., and Andersson L. PloS one, 2014/01/01, Volume 9, Issue 4, p.e94187, (2014) Read More / View Supplemental Materials
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Atg16L1 T300A variant decreases selective autophagy resulting in altered cytokine signaling and decreased antibacterial defenseKG, Lassen, P Kuballa, KL Conway, KK Patel, CE Becker, JM Peloquin, EJ Villablanca, JM Norman, T Liu, RJ Heath, ML Becker, L Fagbami, H Horn, J Mercer, OH Yilmaz, JJ Jaffe, AF Shamji, AK Bhan, SA Carr, MJ Daly, et al. Molecular & cellular proteomics : MCP, (2014) Read More / View Supplemental Materials
2013
S-Nitrosothiol Signaling Regulates Liver Development and Improves Outcome following Toxic Liver Injury.Cox, AG, Saunders DC, Kelsey PB Jr, Conway AA, Tesmenitsky Y., Marchini JF, Brown KK, Stamler JS, Colagiovanni DB, Rosenthal GJ, Croce KJ, North TE, and Goessling W. Cell reports, 2013/12/31, (2013) Read More / View Supplemental Materials
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Pilot investigation of isradipine in the treatment of bipolar depression motivated by genome-wide association.Ostacher, MJ, Iosifescu DV, Hay A., Blumenthal SR, Sklar P., and Perlis RH Bipolar disorders, 2013/12/27, (2013) Read More / View Supplemental Materials
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Genetics of rheumatoid arthritis contributes to biology and drug discovery.Okada, Y., Wu D., Trynka G., Raj T., Terao C., Ikari K., Kochi Y., Ohmura K., Suzuki A., Yoshida S., Graham RR, Manoharan A., Ortmann W., Bhangale T., Denny JC, Carroll RJ, Eyler AE, Greenberg JD, Kremer JM, Pappas DA, et al. Nature, 2013/12/25, (2013) Read More / View Supplemental Materials
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Landscape of genomic alterations in cervical carcinomas.Ojesina, AI, Lichtenstein L., Freeman SS, Pedamallu CS, Imaz-Rosshandler I., Pugh TJ, Cherniack AD, Ambrogio L., Cibulskis K., Bertelsen B., Romero-Cordoba S., Treviño V., Vazquez-Santillan K., Guadarrama AS, Wright AA, Rosenberg MW, Duke F., Kaplan B., Wang R., Nickerson E., et al. Nature, 2013/12/25, (2013) Read More / View Supplemental Materials
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Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico.The SIGMA Type 2 Diabetes, Consortium, team Writing, Williams AL, Jacobs SB, Moreno-Macías H., Huerta-Chagoya A., Churchhouse C., Márquez-Luna C., García-Ortíz H., José Gómez-Vázquez M., Burtt NP, Aguilar-Salinas CA, González-Villalpando C., Florez JC, Orozco L., Haiman CA, Tusié-Luna T., Altshuler D., team Analysis, Williams AL, et al. Nature, 2013/12/25, (2013) Read More / View Supplemental Materials
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Successful whole-exome sequencing from a prostate cancer bone metastasis biopsy.Van Allen, EM, Foye A., Wagle N., Kim W., Carter SL, McKenna A., Simko JP, Garraway LA, and Febbo PG Prostate cancer and prostatic diseases, 2013/12/24, (2013) Read More / View Supplemental Materials
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Bacterial toxins and small molecules elucidate endosomal trafficking.Slater, LH, Clatworthy AE, and Hung DT Trends in microbiology, 2013/12/23, (2013) Read More / View Supplemental Materials
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TRAF2 is an NF-κB-activating oncogene in epithelial cancers.Shen, RR, Zhou AY, Kim E., O'Connell JT, Hagerstrand D., Beroukhim R., and Hahn WC Oncogene, 2013/12/23, (2013) Read More / View Supplemental Materials
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Adult neural stem cells in distinct microdomains generate previously unknown interneuron types.Merkle, FT, Fuentealba LC, Sanders TA, Magno L., Kessaris N., and Alvarez-Buylla A. Nature neuroscience, 2013/12/22, (2013) Read More / View Supplemental Materials
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Genomic insights into WNT/β-catenin signaling.Rosenbluh, J., Wang X., and Hahn WC Trends in pharmacological sciences, 2013/12/20, (2013) Read More / View Supplemental Materials
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Aspirin Use, 8q24 Single Nucleotide Polymorphism rs6983267, and Colorectal Cancer According to CTNNB1 Alterations.Nan, H., Morikawa T., Suuriniemi M., Imamura Y., Werner L., Kuchiba A., Yamauchi M., Hunter DJ, Kraft P., Giovannucci EL, Fuchs CS, Ogino S., Freedman ML, and Chan AT Journal of the National Cancer Institute, 2013/12/18, Volume 105, Issue 24, p.1852-61, (2013) Read More / View Supplemental Materials
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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo.Rouskin, S., Zubradt M., Washietl S., Kellis M., and Weissman JS Nature, 2013/12/15, (2013) Read More / View Supplemental Materials
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Meta-analysis of gene-level tests for rare variant association.Liu, DJ, Peloso GM, Zhan X., Holmen OL, Zawistowski M., Feng S., Nikpay M., Auer PL, Goel A., Zhang H., Peters U., Farrall M., Orho-Melander M., Kooperberg C., McPherson R., Watkins H., Willer CJ, Hveem K., Melander O., Kathiresan S., et al. Nature genetics, 2013/12/15, (2013) Read More / View Supplemental Materials
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Reduced local mutation density in regulatory DNA of cancer genomes is linked to DNA repair.Polak, P., Lawrence MS, Haugen E., Stoletzki N., Stojanov P., Thurman RE, Garraway LA, Mirkin S., Getz G., Stamatoyannopoulos JA, and Sunyaev SR Nature biotechnology, 2013/12/15, (2013) Read More / View Supplemental Materials
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Sterilization of granulomas is common in active and latent tuberculosis despite within-host variability in bacterial killing.Lin, PL, Ford CB, Coleman MT, Myers AJ, Gawande R., Ioerger T., Sacchettini J., Fortune SM, and Flynn JL Nature medicine, 2013/12/15, (2013) Read More / View Supplemental Materials
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EMRE is an essential component of the mitochondrial calcium uniporter complex.Sancak, Y., Markhard AL, Kitami T., Kovács-Bogdán E., Kamer KJ, Udeshi ND, Carr SA, Chaudhuri D., Clapham DE, Li AA, Calvo SE, Goldberger O., and Mootha VK Science (New York, N.Y.), 2013/12/13, Volume 342, Issue 6164, p.1379-82, (2013) Read More / View Supplemental Materials
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Resource competition may lead to effective treatment of antibiotic resistant infections.Gomes, AL, Galagan JE, and Segrè D. PloS one, 2013/12/13, Volume 8, Issue 12, p.e80775, (2013) Read More / View Supplemental Materials
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Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments.Kheradpour, P., and Kellis M. Nucleic acids research, 2013/12/13, (2013) Read More / View Supplemental Materials
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Genome-wide analyses implicate 33 loci in heritable dog osteosarcoma, including regulatory variants near CDKN2A/B.Karlsson, EK, Sigurdsson S., Ivansson E., Thomas R., Elvers I., Wright J., Howald C., Tonomura N., Perloski M., Swofford R., Biagi T., Fryc S., Anderson N., Courtay-Cahen C., Youell L., Ricketts SL, Mandlebaum S., Rivera P., von Euler H., Kisseberth WC, et al. Genome biology, 2013/12/12, Volume 14, Issue 12, p.R132, (2013) Read More / View Supplemental Materials
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High-throughput genetic screen for synaptogenic factors: identification of LRP6 as critical for excitatory synapse development.Sharma, K., Choi SY, Zhang Y., Nieland TJ, Long S., Li M., and Huganir RL Cell reports, 2013/12/12, Volume 5, Issue 5, p.1330-41, (2013) Read More / View Supplemental Materials
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Discovery and characterization of super-enhancer-associated dependencies in diffuse large B cell lymphoma.Chapuy, B., McKeown MR, Lin CY, Monti S., Roemer MG, Qi J., Rahl PB, Sun HH, Yeda KT, Doench JG, Reichert E., Kung AL, Rodig SJ, Young RA, Shipp M. A., and Bradner JE Cancer cell, 2013/12/09, Volume 24, Issue 6, p.777-90, (2013) Read More / View Supplemental Materials
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Integrative and Comparative Genomic Analysis of Lung Squamous Cell Carcinomas in East Asian Patients.Kim, Y., Hammerman PS, Kim J., Yoon JA, Lee Y., Sun JM, Wilkerson MD, Pedamallu CS, Cibulskis K., Yoo YK, Lawrence MS, Stojanov P., Carter SL, McKenna A., Stewart C., Sivachenko AY, Oh IJ, Kim HK, Choi YS, Kim K., et al. Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2013/12/09, (2013) Read More / View Supplemental Materials
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SQSTM1 Is a Pathogenic Target of 5q Copy Number Gains in Kidney Cancer.Li, L., Shen C., Nakamura E., Ando K., Signoretti S., Beroukhim R., Cowley GS, Lizotte P., Liberzon E., Bair S., Root DE, Tamayo P., Tsherniak A., Cheng SC, Tabak B., Jacobsen A., Hakimi AA, Schultz N., Ciriello G., Sander C., et al. Cancer cell, 2013/12/09, Volume 24, Issue 6, p.738-50, (2013) Read More / View Supplemental Materials
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Statistical design for biospecimen cohort size in proteomics-based biomarker discovery and verification studies.Skates, SJ, Gillette MA, LaBaer J., Carr SA, Anderson L., Liebler DC, Ransohoff D., Rifai N., Kondratovich M., Težak Ž., Mansfield E., Oberg AL, Wright I., Barnes G., Gail M., Mesri M., Kinsinger CR, Rodriguez H., and Boja ES Journal of proteome research, 2013/12/06, Volume 12, Issue 12, p.5383-94, (2013) Read More / View Supplemental Materials
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Health disparities in kidney disease--emerging data from the human genome.Williams, WW, and Pollak MR The New England journal of medicine, 2013/12/05, Volume 369, Issue 23, p.2260-1, (2013) Read More / View Supplemental Materials
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis.Schwartz, S., Agarwala SD, Mumbach MR, Jovanovic M., Mertins P., Shishkin A., Tabach Y., Mikkelsen TS, Satija R., Ruvkun G., Carr SA, Lander E. S., Fink GR, and Regev A. Cell, 2013/12/05, Volume 155, Issue 6, p.1409-21, (2013) Read More / View Supplemental Materials
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Multiplex cytological profiling assay to measure diverse cellular States.Gustafsdottir, SM, Ljosa V., Sokolnicki KL, Anthony Wilson J., Walpita D., Kemp MM, Petri Seiler K., Carrel HA, Golub T. R., Schreiber SL, Clemons PA, Carpenter AE, and Shamji AF PloS one, 2013/12/02, Volume 8, Issue 12, p.e80999, (2013) Read More / View Supplemental Materials
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Transcriptome complexity in germ cells .Soumillon, M. Medecine sciences : M/S, 2013/12/01, Volume 29, Issue 12, p.1077-9, (2013) Read More / View Supplemental Materials
Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements.Zhang, CZ, Leibowitz ML, and Pellman D. Genes & development, 2013/12/01, Volume 27, Issue 23, p.2513-30, (2013) Read More / View Supplemental Materials
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Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment.Ljosa, V., Caie PD, Ter Horst R., Sokolnicki KL, Jenkins EL, Daya S., Roberts ME, Jones TR, Singh S., Genovesio A., Clemons PA, Carragher NO, and Carpenter AE Journal of biomolecular screening, 2013/12/01, Volume 18, Issue 10, p.1321-9, (2013) Read More / View Supplemental Materials
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High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions.Amir, A., Zeisel A., Zuk O., Elgart M., Stern S., Shamir O., Turnbaugh PJ, Soen Y., and Shental N. Nucleic acids research, 2013/12/01, Volume 41, Issue 22, p.e205, (2013) Read More / View Supplemental Materials
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Inferring developmental stage composition from gene expression in human malaria.Joice, R., Narasimhan V., Montgomery J., Sidhu AB, Oh K., Meyer E., Pierre-Louis W., Seydel K., Milner D., Williamson K., Wiegand R., Ndiaye D., Daily J., Wirth D., Taylor T., Huttenhower C., and Marti M. PLoS computational biology, 2013/12/01, Volume 9, Issue 12, p.e1003392, (2013) Read More / View Supplemental Materials
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Niche-based screening identifies small-molecule inhibitors of leukemia stem cells.Hartwell, KA, Miller PG, Mukherjee S., Kahn AR, Stewart AL, Logan DJ, Negri JM, Duvet M., Järås M., Puram R., Dancik V., Al-Shahrour F., Kindler T., Tothova Z., Chattopadhyay S., Hasaka T., Narayan R., Dai M., Huang C., Shterental S., et al. Nature chemical biology, 2013/12/01, Volume 9, Issue 12, p.840-8, (2013) Read More / View Supplemental Materials
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A novel GATA6 mutation in a child with congenital heart malformation and neonatal diabetes.Eifes, S., Chudasama KK, Molnes J., Wagner K., Hoang T., Schierloh U., Rocour-Brumioul D., Johansson S., Njølstad PR, and de Beaufort C. Clinical case reports, 2013/12/01, Volume 1, Issue 2, p.86-90, (2013) Read More / View Supplemental Materials
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Novel Mechanism of Tumor Suppression by Polarity Gene Discs Large 1 (DLG1) Revealed in a Murine Model of Pediatric B-ALL.Sandoval, GJ, Graham DB, Gmyrek GB, Akilesh HM, Fujikawa K., Sammut B., Bhattacharya D., Srivatsan S., Kim A., Shaw AS, Yang-Iott K., Bassing CH, Duncavage E., Xavier RJ, and Swat W. Cancer immunology research, 2013/12/01, Volume 1, Issue 6, p.426-37, (2013) Read More / View Supplemental Materials
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Poly-combing the genome for RNA.Goff, LA, and Rinn JL Nature structural & molecular biology, 2013/12/01, Volume 20, Issue 12, p.1344-6, (2013) Read More / View Supplemental Materials
Quantifying Missing Heritability at Known GWAS Loci.Gusev, A., Bhatia G., Zaitlen N., Vilhjalmsson BJ, Diogo D., Stahl EA, Gregersen PK, Worthington J., Klareskog L., Raychaudhuri S., Plenge RM, Pasaniuc B., and Price AL PLoS genetics, 2013/12/01, Volume 9, Issue 12, p.e1003993, (2013) Read More / View Supplemental Materials
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Somatic mutation of CDKN1B in small intestine neuroendocrine tumors.Francis, JM, Kiezun A., Ramos AH, Serra S., Pedamallu CS, Qian ZR, Banck MS, Kanwar R., Kulkarni AA, Karpathakis A., Manzo V., Contractor T., Philips J., Nickerson E., Pho N., Hooshmand SM, Brais LK, Lawrence MS, Pugh T., McKenna A., et al. Nature genetics, 2013/12/01, Volume 45, Issue 12, p.1483-6, (2013) Read More / View Supplemental Materials
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The spirit of competition: to win or not to win.Szczepinska, T., Iwasaki W., and Abeel T. PLoS computational biology, 2013/12/01, Volume 9, Issue 12, p.e1003413, (2013) Read More / View Supplemental Materials
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Using chromatin marks to interpret and localize genetic associations to complex human traits and diseases.Trynka, G., and Raychaudhuri S. Current opinion in genetics & development, 2013/12/01, Volume 23, Issue 6, p.635-41, (2013) Read More / View Supplemental Materials
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On stand by: host genetics of HIV control.Carrington, M., Bashirova AA, and McLaren PJ AIDS (London, England), 2013/11/28, Volume 27, Issue 18, p.2831-9, (2013) Read More / View Supplemental Materials
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Picking the lock on pluripotency.Eggan, K. The New England journal of medicine, 2013/11/28, Volume 369, Issue 22, p.2150-1, (2013) Read More / View Supplemental Materials
Clinical relevance and functional consequences of the TNFRSF1A multiple sclerosis locus.Ottoboni, L., Frohlich IY, Lee M., Healy BC, Keenan BT, Xia Z., Chitnis T., Guttmann CR, Khoury SJ, Weiner HL, Hafler DA, and De Jager PL Neurology, 2013/11/26, Volume 81, Issue 22, p.1891-9, (2013) Read More / View Supplemental Materials
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Polygenic dissection of diagnosis and clinical dimensions of bipolar disorder and schizophrenia.Ruderfer, DM, Fanous AH, Ripke S., McQuillin A., Amdur RL, Schizophrenia Working Group of the Psychiatric Genomics Consortium, Bipolar Disorder Working Group of the Psychiatric Genomics Consortium, Cross-Disorder Working Group of the Psychiatric Genomics Consortium, Gejman PV, O'Donovan MC, Andreassen OA, Djurovic S., Hultman CM, Kelsoe JR, Jamain S., Landén M., Leboyer M., Nimgaonkar V., Nurnberger J., Smoller JW, et al. Molecular psychiatry, 2013/11/26, (2013) Read More / View Supplemental Materials
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A Small-Molecule Inducer of PDX1 Expression Identified by High-Throughput Screening.Yuan, Y., Hartland K., Boskovic Z., Wang Y., Walpita D., Lysy PA, Zhong C., Young DW, Kim YK, Tolliday NJ, Sokal EM, Schreiber SL, and Wagner BK Chemistry & biology, 2013/11/23, (2013) Read More / View Supplemental Materials
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Shared Genetic Susceptibility to Ischemic Stroke and Coronary Artery Disease: A Genome-Wide Analysis of Common Variants.Dichgans, M., Malik R., König IR, Rosand J., Clarke R., Gretarsdottir S., Thorleifsson G., Mitchell BD, Assimes TL, Levi C., Odonnell CJ, Fornage M., Thorsteinsdottir U., Psaty BM, Hengstenberg C., Seshadri S., Erdmann J., Bis JC, Peters A., Boncoraglio GB, et al. Stroke; a journal of cerebral circulation, 2013/11/21, (2013) Read More / View Supplemental Materials
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