Recent Broad Publications

Comparative analysis of RNA sequencing methods for degraded or low-input samples.
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Small-Molecule Inhibitors of Cytokine-Mediated STAT1 Signal Transduction in β-Cells with Improved Aqueous Solubility.
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Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells.
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Entering the age of whole-exome sequencing in rheumatic diseases: Novel insights into disease pathogenicity.
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Young and old genetically heterogeneous HET3 mice on a rapamycin diet are glucose intolerant but insulin sensitive.
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Scientific Publications

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2008

Integrative analysis reveals 53BP1 copy loss and decreased expression in a subset of human diffuse large B-cell lymphomasTakeyama, K., Monti S., Manis J. P., Cin Dal P., Getz G., Beroukhim R., Dutt S., Aster J. C., Alt F. W., Golub T. R., and Shipp M. A. Oncogene, 2008/01/10/, Volume 27, Issue 3, p.318 - 22, (2008) Read More / View Supplemental Materials

2005

Allele-specific amplification in cancer revealed by SNP array analysisLaFramboise, Thomas, Weir Barbara A., Zhao Xiaojun, Beroukhim Rameen, Li Cheng, Harrington David, Sellers William R., and Meyerson Matthew PLoS Computational Biology, 2005/11//, Volume 1, Issue 6, p.e65 - e65, (2005) Read More / View Supplemental Materials

2004

An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arraysZhao, Xiaojun, Li Cheng, Paez Guillermo J., Chin Koei, and J Cancer Research, 2004/05/01/, Volume 64, Issue 9, p.3060 - 71, (2004) Read More / View Supplemental Materials

Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplificationPaez, Guillermo J., Lin Ming, Beroukhim Rameen, Lee Jeffrey C., Zhao Xiaojun, Richter Daniel J., Gabriel Stacey, Herman Paula, Sasaki Hidefumi, Altshuler David, Li Cheng, Meyerson Matthew, and Sellers William R. Nucleic Acids Research, 2004///, Volume 32, Issue 9, p.e71 - e71, (2004) Read More / View Supplemental Materials

2000

Loss-of-heterozygosity analysis of small-cell lung carcinomas using single-nucleotide polymorphism arraysLindblad-Toh, K., Tanenbaum D. M., Daly M. J., Winchester E., Lui W. O., Villapakkam A., Stanton S. E., Larsson C., Hudson T. J., Johnson B. E., Lander E. S., and Meyerson M. Nature Biotechnology, 2000/09//, Volume 18, Issue 9, p.1001 - 5, (2000) Read More / View Supplemental Materials