Scientific Publications

Gel-free multiplexed reduced representation bisulfite sequencing for large-scale DNA methylation profiling.

Publication TypeJournal Article
AuthorsBoyle, P., Clement K., Gu H., Smith ZD, Ziller M., Fostel JL, Holmes L., Meldrim J., Kelley F., Gnirke A., and Meissner A.
AbstractABSTRACT: Sequencing-based approaches have led to new insights about DNA methylation. While many different techniques for genome-scale mapping of DNA methylation have been employed, throughput has been a key limitation for most. To further facilitate the mapping of DNA methylation, we describe a protocol for gel-free multiplexed reduced representation bisulfite sequencing (mRRBS) that reduces the workload dramatically and enables processing of 96 or more samples per week. mRRBS achieves similar CpG coverage to the original RRBS protocol, while the higher throughput and lower cost make it better suited for large-scale DNA methylation mapping studies, including cohorts of cancer samples.
Year of Publication2012
JournalGenome biology
Volume13
Issue10
PagesR92
Date Published (YYYY/MM/DD)2012/10/03
ISSN Number1465-6906
DOI10.1186/gb-2012-13-10-r92
PubMedhttp://www.ncbi.nlm.nih.gov/pubmed/23034176?dopt=Abstract