Using GenePattern for gene expression analysis.

Curr Protoc Bioinformatics
Authors
Keywords
Abstract

The abundance of genomic data now available in biomedical research has stimulated the development of sophisticated statistical methods for interpreting the data, and of special visualization tools for displaying the results in a concise and meaningful manner. However, biologists often find these methods and tools difficult to understand and use correctly. GenePattern is a freely available software package that addresses this issue by providing more than 100 analysis and visualization tools for genomic research in a comprehensive user-friendly environment for users at all levels of computational experience and sophistication. This unit demonstrates how to prepare and analyze microarray data in GenePattern.

Year of Publication
2008
Journal
Curr Protoc Bioinformatics
Volume
Chapter 7
Pages
Unit 7.12
Date Published
2008 Jun
ISSN
1934-340X
URL
DOI
10.1002/0471250953.bi0712s22
PubMed ID
18551415
PubMed Central ID
PMC3893799
Links
Grant list
R01 GM074024 / GM / NIGMS NIH HHS / United States