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  • Showing 1-49 of 49 Results
2012
Breast cancer stratification from analysis of micro-array data of micro-dissected specimens.Alexe, G., Dalgin GS, Scanfeld D., Tamayo P., Mesirov J. P., Ganesan S., Delisi C., and Bhanot G. Genome informatics. International Conference on Genome Informatics, 2012/01/05, Volume 18, p.130-40, (2012) Read More / View Supplemental Materials
Abstract
2011
Systematic investigation of genetic vulnerabilities across cancer cell lines reveals lineage-specific dependencies in ovarian cancer.Cheung, HW, Cowley GS, Weir BA, Boehm JS, Rusin S., Scott JA, East A., Ali LD, Lizotte PH, Wong TC, Jiang G., Hsiao J., Mermel CH, Getz G., Barretina J., Gopal S., Tamayo P., Gould J., Tsherniak A., Stransky N., et al. Proceedings of the National Academy of Sciences of the United States of America, 2011/07/26, Volume 108, Issue 30, p.12372-7, (2011) Read More / View Supplemental Materials
Abstract
Molecular signatures database (MSigDB) 3.0.Liberzon, A., Subramanian A., Pinchback R., Thorvaldsdóttir H., Tamayo P., and Mesirov J. P. Bioinformatics (Oxford, England), 2011/06/15, Volume 27, Issue 12, p.1739-40, (2011) Read More / View Supplemental Materials
Abstract
Integrative genomic analysis of medulloblastoma identifies a molecular subgroup that drives poor clinical outcome.Cho, YJ, Tsherniak A., Tamayo P., Santagata S., Ligon A., Greulich H., Berhoukim R., Amani V., Goumnerova L., Eberhart CG, Lau CC, Olson JM, Gilbertson RJ, Gajjar A., Delattre O., Kool M., Ligon K., Meyerson M., Mesirov J. P., and Pomeroy SL Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2011/04/10, Volume 29, Issue 11, p.1424-30, (2011) Read More / View Supplemental Materials
Abstract
Predicting relapse in patients with medulloblastoma by integrating evidence from clinical and genomic features.Tamayo, P., Cho YJ, Tsherniak A., Greulich H., Ambrogio L., Schouten-van Meeteren N., Zhou T., Buxton A., Kool M., Meyerson M., Pomeroy SL, and Mesirov J. P. Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2011/04/10, Volume 29, Issue 11, p.1415-23, (2011) Read More / View Supplemental Materials
Abstract
Integrative genomics viewer.Robinson, JT, Thorvaldsdóttir H., Winckler W., Guttman M., Lander E. S., Getz G., and Mesirov J. P. Nature biotechnology, 2011/01/01, Volume 29, Issue 1, p.24-6, (2011) Read More / View Supplemental Materials
2010
Computer science. Accessible reproducible research.Mesirov, J. P. Science (New York, N.Y.), 2010/01/22, Volume 327, Issue 5964, p.415-6, (2010) Read More / View Supplemental Materials
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1.Verhaak, RG, Hoadley KA, Purdom E., Wang V., Qi Y., Wilkerson MD, Miller CR, Ding L., Golub T., Mesirov J. P., Alexe G., Lawrence M., O'Kelly M., Tamayo P., Weir BA, Gabriel S., Winckler W., Gupta S., Jakkula L., Feiler HS, et al. Cancer cell, 2010/01/19, Volume 17, Issue 1, p.98-110, (2010) Read More / View Supplemental Materials
Abstract
2009
Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1.Barbie, DA, Tamayo P., Boehm JS, Kim SY, Moody SE, Dunn IF, Schinzel AC, Sandy P., Meylan E., Scholl C., Fröhling S., Chan EM, Sos ML, Michel K., Mermel C., Silver SJ, Weir BA, Reiling JH, Sheng Q., Gupta PB, et al. Nature, 2009/11/05, Volume 462, Issue 7269, p.108-12, (2009) Read More / View Supplemental Materials
Abstract
Automated high-dimensional flow cytometric data analysis.Pyne, S., Hu X., Wang K., Rossin E., Lin TI, Maier LM, Baecher-Allan C., McLachlan GJ, Tamayo P., Hafler DA, De Jager PL, and Mesirov J. P. Proceedings of the National Academy of Sciences of the United States of America, 2009/05/26, Volume 106, Issue 21, p.8519-24, (2009) Read More / View Supplemental Materials
Abstract
Prediction of high-responding peptides for targeted protein assays by mass spectrometry.Fusaro, VA, Mani D. R., Mesirov J. P., and Carr SA Nature biotechnology, 2009/02/01, Volume 27, Issue 2, p.190-8, (2009) Read More / View Supplemental Materials
Abstract
2008
Carcinoma-associated fibroblast-like differentiation of human mesenchymal stem cellsMishra, Pravin J., Mishra Prasun J., Humeniuk Rita, Medina Daniel J., Alexe Gabriela, Mesirov Jill P., Ganesan Sridhar, Glod John W., and Banerjee Debabrata Cancer Research, 2008/06/01/, Volume 68, Issue 11, p.4331 - 9, (2008) Read More / View Supplemental Materials
Abstract
Using GenePattern for gene expression analysis.Kuehn, H., Liberzon A., Reich M., and Mesirov J. P. Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], 2008/06/01, Volume Chapter 7, p.Unit 7.12, (2008) Read More / View Supplemental Materials
Abstract
Gene expression changes in an animal melanoma model correlate with aggressiveness of human melanoma metastasesXu, Lei, Shen Steven S., Hoshida Yujin, Subramanian Aravind, Ross Ken, Brunet Jean-Philippe, Wagner Stephan N., Ramaswamy Sridhar, Mesirov Jill P., and Hynes Richard O. Molecular Cancer Research: MCR, 2008/05//, Volume 6, Issue 5, p.760 - 9, (2008) Read More / View Supplemental Materials
Abstract
2007
GSEA-P: a desktop application for Gene Set Enrichment Analysis.Subramanian, A., Kuehn H., Gould J., Tamayo P., and Mesirov J. P. Bioinformatics (Oxford, England), 2007/12/01, Volume 23, Issue 23, p.3251-3, (2007) Read More / View Supplemental Materials
Abstract
Subclass mapping: identifying common subtypes in independent disease data sets.Hoshida, Y., Brunet JP, Tamayo P., Golub T. R., and Mesirov J. P. PloS one, 2007/11/21, Volume 2, Issue 11, p.e1195, (2007) Read More / View Supplemental Materials
Abstract
High expression of lymphocyte-associated genes in node-negative HER2+ breast cancers correlates with lower recurrence ratesAlexe, Gabriela, Dalgin Gul S., Scanfeld Daniel, Tamayo Pablo, Mesirov Jill P., DeLisi Charles, Harris Lyndsay, Barnard Nicola, Martel Maritza, Levine Arnold J., Ganesan Shridar, and Bhanot Gyan Cancer Research, 2007/11/15/, Volume 67, Issue 22, p.10669 - 76, (2007) Read More / View Supplemental Materials
Abstract
High expression of lymphocyte-associated genes in node-negative HER2+ breast cancers correlates with lower recurrence rates.Alexe, G., Dalgin GS, Scanfeld D., Tamayo P., Mesirov J. P., Delisi C., Harris L., Barnard N., Martel M., Levine AJ, Ganesan S., and Bhanot G. Cancer research, 2007/11/15, Volume 67, Issue 22, p.10669-76, (2007) Read More / View Supplemental Materials
Abstract
Efficient mapping of mendelian traits in dogs through genome-wide association.Karlsson, EK, Baranowska I., Wade CM, Salmon Hillbertz NH, Zody MC, Anderson N., Biagi TM, Patterson N., Pielberg GR, Kulbokas EJ 3rd, Comstock KE, Keller ET, Mesirov J. P., von Euler H., Kämpe O., Hedhammar A., Lander E. S., Andersson G., Andersson L., and Lindblad-Toh K. Nature genetics, 2007/11/01, Volume 39, Issue 11, p.1321-8, (2007) Read More / View Supplemental Materials
Abstract
Comment on "The consensus coding sequences of human breast and colorectal cancers".Getz, G., Höfling H., Mesirov J. P., Golub T. R., Meyerson M., Tibshirani R., and Lander E. S. Science (New York, N.Y.), 2007/09/14, Volume 317, Issue 5844, p.1500, (2007) Read More / View Supplemental Materials
Abstract
Metagene projection for cross-platform, cross-species characterization of global transcriptional statesTamayo, Pablo, Scanfeld Daniel, Ebert Benjamin L., Gillette Michael A., Roberts Charles W. M., and Mesirov Jill P. Proceedings of the National Academy of Sciences of the United States of America, 2007/04/03/, Volume 104, Issue 14, p.5959 - 64, (2007) Read More / View Supplemental Materials
Abstract
Metagene projection for cross-platform, cross-species characterization of global transcriptional states.Tamayo, P., Scanfeld D., Ebert BL, Gillette MA, Roberts CW, and Mesirov J. P. Proceedings of the National Academy of Sciences of the United States of America, 2007/04/03, Volume 104, Issue 14, p.5959-64, (2007) Read More / View Supplemental Materials
Abstract
Portraits of breast cancer progressionDalgin, Gul S., Alexe Gabriela, Scanfeld Daniel, Tamayo Pablo, Mesirov Jill P., Ganesan Shridar, DeLisi Charles, and Bhanot Gyan BMC Bioinformatics, 2007///, Volume 8, p.291 - 291, (2007) Read More / View Supplemental Materials
Abstract
Subclass mapping: identifying common subtypes in independent disease data setsHoshida, Yujin, Brunet Jean-Philippe, Tamayo Pablo, Golub Todd R., and Mesirov Jill P. PLoS ONE, 2007///, Volume 2, Issue 11, p.e1195 - e1195, (2007) Read More / View Supplemental Materials
Abstract
2006
Comparative gene marker selection suiteGould, Joshua, Getz Gad, Monti Stefano, Reich Michael, and Mesirov Jill P. Bioinformatics (Oxford, England), 2006/08/01/, Volume 22, Issue 15, p.1924 - 5, (2006) Read More / View Supplemental Materials
Abstract
Comparative gene marker selection suite.Gould, J., Getz G., Monti S., Reich M., and Mesirov J. P. Bioinformatics (Oxford, England), 2006/08/01, Volume 22, Issue 15, p.1924-5, (2006) Read More / View Supplemental Materials
Abstract
Combo: a whole genome comparative browser.Engels, R., Yu T., Burge C., Mesirov J. P., DeCaprio D., and Galagan JE Bioinformatics (Oxford, England), 2006/07/15, Volume 22, Issue 14, p.1782-3, (2006) Read More / View Supplemental Materials
Abstract
GenePattern 2.0Reich, Michael, Liefeld Ted, Gould Joshua, Lerner Jim, Tamayo Pablo, and Mesirov Jill P. Nature Genetics, 2006/05//, Volume 38, Issue 5, p.500 - 1, (2006) Read More / View Supplemental Materials
2005
Inactivation of the Snf5 tumor suppressor stimulates cell cycle progression and cooperates with p53 loss in oncogenic transformationIsakoff, Michael S., Sansam Courtney G., Tamayo Pablo, Subramanian Aravind, Evans Julia A., Fillmore Christine M., Wang Xi, Biegel Jaclyn A., Pomeroy Scott L., Mesirov Jill P., and Roberts Charles W. M. Proceedings of the National Academy of Sciences of the United States of America, 2005/12/06/, Volume 102, Issue 49, p.17745 - 50, (2005) Read More / View Supplemental Materials
Abstract
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profilesSubramanian, Aravind, Tamayo Pablo, Mootha Vamsi K., Mukherjee Sayan, Ebert Benjamin L., Gillette Michael A., Paulovich Amanda, Pomeroy Scott L., Golub Todd R., Lander Eric S., and Mesirov Jill P. Proceedings of the National Academy of Sciences of the United States of America, 2005/10/25/, Volume 102, Issue 43, p.15545 - 50, (2005) Read More / View Supplemental Materials
Abstract
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.Subramanian, A., Tamayo P., Mootha VK, Mukherjee S., Ebert BL, Gillette MA, Paulovich A., Pomeroy SL, Golub T. R., Lander E. S., and Mesirov J. P. Proceedings of the National Academy of Sciences of the United States of America, 2005/10/25, Volume 102, Issue 43, p.15545-50, (2005) Read More / View Supplemental Materials
Abstract
GeneCruiser: a web service for the annotation of microarray dataLiefeld, Ted, Reich Michael, Gould Joshua, Zhang Peili, Tamayo Pablo, and Mesirov Jill P. Bioinformatics (Oxford, England), 2005/09/15/, Volume 21, Issue 18, p.3681 - 2, (2005) Read More / View Supplemental Materials
Abstract
GeneCruiser: a web service for the annotation of microarray data.Liefeld, T., Reich M., Gould J., Zhang P., Tamayo P., and Mesirov J. P. Bioinformatics (Oxford, England), 2005/09/15, Volume 21, Issue 18, p.3681-2, (2005) Read More / View Supplemental Materials
Abstract
Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.Vinson, JP, Jaffe DB, O'Neill K., Karlsson EK, Stange-Thomann N., Anderson S., Mesirov J. P., Satoh N., Satou Y., Nusbaum C., Birren B., Galagan JE, and Lander E. S. Genome research, 2005/08/01, Volume 15, Issue 8, p.1127-35, (2005) Read More / View Supplemental Materials
Abstract
Improving genome annotations using phylogenetic profile anomaly detection.Mikkelsen, TS, Galagan JE, and Mesirov J. P. Bioinformatics (Oxford, England), 2005/02/15, Volume 21, Issue 4, p.464-70, (2005) Read More / View Supplemental Materials
Abstract
An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis.Sweet-Cordero, A., Mukherjee S., Subramanian A., You H., Roix JJ, Ladd-Acosta C., Mesirov J., Golub T. R., and Jacks T. Nature genetics, 2005/01/01, Volume 37, Issue 1, p.48-55, (2005) Read More / View Supplemental Materials
Abstract
An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysisSweet-Cordero, Alejandro, Mukherjee Sayan, Subramanian Aravind, You Han, Roix Jeffrey J., Ladd-Acosta Christine, Mesirov Jill, Golub Todd R., and Jacks Tyler Nature Genetics, 2005/01//, Volume 37, Issue 1, p.48 - 55, (2005) Read More / View Supplemental Materials
Abstract
2004
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.Jaillon, O., Aury JM, Brunet F., Petit JL, Stange-Thomann N., Mauceli E., Bouneau L., Fischer C., Ozouf-Costaz C., Bernot A., Nicaud S., Jaffe D., Fisher S., Lutfalla G., Dossat C., Segurens B., Dasilva C., Salanoubat M., Levy M., Boudet N., et al. Nature, 2004/10/21, Volume 431, Issue 7011, p.946-57, (2004) Read More / View Supplemental Materials
Abstract
GeneCluster 2.0: an advanced toolset for bioarray analysisReich, M., Ohm K., Angelo M., Tamayo P., and Mesirov J. P. Bioinformatics (Oxford, England), 2004/07/22/, Volume 20, Issue 11, p.1797 - 8, (2004) Read More / View Supplemental Materials
Abstract
GeneCluster 2.0: an advanced toolset for bioarray analysis.Reich, M., Ohm K., Angelo M., Tamayo P., and Mesirov J. P. Bioinformatics (Oxford, England), 2004/07/22, Volume 20, Issue 11, p.1797-8, (2004) Read More / View Supplemental Materials
Abstract
Metagenes and molecular pattern discovery using matrix factorizationBrunet, Jean-Philippe, Tamayo Pablo, Golub Todd R., and Mesirov Jill P. Proceedings of the National Academy of Sciences of the United States of America, 2004/03/23/, Volume 101, Issue 12, p.4164 - 9, (2004) Read More / View Supplemental Materials
Abstract
Metagenes and molecular pattern discovery using matrix factorization.Brunet, JP, Tamayo P., Golub T. R., and Mesirov J. P. Proceedings of the National Academy of Sciences of the United States of America, 2004/03/23, Volume 101, Issue 12, p.4164-9, (2004) Read More / View Supplemental Materials
Abstract
2003
Estimating dataset size requirements for classifying DNA microarray dataMukherjee, Sayan, Tamayo Pablo, Rogers Simon, Rifkin Ryan, Engle Anna, Campbell Colin, Golub Todd R., and Mesirov Jill P. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology, 2003///, Volume 10, Issue 2, p.119 - 42, (2003) Read More / View Supplemental Materials
Abstract
2002
Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learningShipp, Margaret A., Ross Ken N., Tamayo Pablo, Weng Andrew P., Kutok Jeffery L., Aguiar Ricardo C. T., Gaasenbeek Michelle, Angelo Michael, Reich Michael, Pinkus Geraldine S., Ray Tane S., Koval Margaret A., Last Kim W., Norton Andrew, Lister Andrew T., and Mesirov Jill Nature Medicine, 2002/01//, Volume 8, Issue 1, p.68 - 74, (2002) Read More / View Supplemental Materials
Abstract
2001
Multiclass cancer diagnosis using tumor gene expression signaturesRamaswamy, S., Tamayo P., Rifkin R., Mukherjee S., Yeang C. H., Angelo M., Ladd C., Reich M., Latulippe E., Mesirov J. P., Poggio T., Gerald W., Loda M., Lander E. S., and Golub T. R. Proceedings of the National Academy of Sciences of the United States of America, 2001/12/18/, Volume 98, Issue 26, p.15149 - 54, (2001) Read More / View Supplemental Materials
Abstract
Chemosensitivity prediction by transcriptional profilingStaunton, J. E., Slonim D. K., Coller H. A., Tamayo P., Angelo M. J., Park J., Scherf U., Lee J. K., Reinhold W. O., Weinstein J. N., Mesirov J. P., Lander E. S., and Golub T. R. Proceedings of the National Academy of Sciences of the United States of America, 2001/09/11/, Volume 98, Issue 19, p.10787 - 92, (2001) Read More / View Supplemental Materials
Abstract
Molecular classification of multiple tumor typesYeang, C. H., Ramaswamy S., Tamayo P., Mukherjee S., Rifkin R. M., Angelo M., Reich M., Lander E., Mesirov J., and Golub T. Bioinformatics (Oxford, England), 2001///, Volume 17 Suppl 1, p.S316-22 - S316-22, (2001) Read More / View Supplemental Materials
Abstract
1999
Molecular classification of cancer: class discovery and class prediction by gene expression monitoringGolub, T. R., Slonim D. K., Tamayo P., Huard C., Gaasenbeek M., Mesirov J. P., Coller H., Loh M. L., Downing J. R., Caligiuri M. A., Bloomfield C. D., and Lander E. S. Science (New York, N.Y.), 1999/10/15/, Volume 286, Issue 5439, p.531 - 7, (1999) Read More / View Supplemental Materials
Abstract
Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiationTamayo, P., Slonim D., Mesirov J., Zhu Q., Kitareewan S., Dmitrovsky E., Lander E. S., and Golub T. R. Proceedings of the National Academy of Sciences of the United States of America, 1999/03/16/, Volume 96, Issue 6, p.2907 - 12, (1999) Read More / View Supplemental Materials
Abstract
  • Showing 1-49 of 49 Results