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2016
Baeyer-Villiger Monooxygenases EthA and MymA Are Required for Activation of Replicating and Non-replicating Mycobacterium tuberculosis Inhibitors.Grant, SS, Wellington S., Kawate T., Desjardins CA, Silvis MR, Wivagg C., Thompson M., Gordon K., Kazyanskaya E., Nietupski R., Haseley N., Iwase N., Earl AM, FitzGerald M., and Hung DT Cell chemical biology, 2016/06/23, Volume 23, Issue 6, p.666-77, (2016) Read More / View Supplemental Materials
Abstract
Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance.Desjardins, CA, Cohen KA, Munsamy V., Abeel T., Maharaj K., Walker BJ, Shea TP, Almeida DV, Manson AL, Salazar A., Padayatchi N., O'Donnell MR, Mlisana KP, Wortman J., Birren BW, Grosset J., Earl AM, and Pym AS Nature genetics, 2016/04/11, (2016) Read More / View Supplemental Materials
Abstract
Draft Genome Sequences of Two Extensively Drug-Resistant Strains of Mycobacterium tuberculosis Belonging to the Euro-American S Lineage.Malinga, LA, Abeel T., Desjardins CA, Dlamini TC, Cassell G., Chapman SB, Birren BW, Earl AM, and van der Walt M. Genome announcements, 2016/03/03, Volume 4, Issue 2, (2016) Read More / View Supplemental Materials
Abstract
Populations of latent Mycobacterium tuberculosis lack a cell wall: Isolation, visualization, and whole-genome characterization.Velayati, AA, Abeel T., Shea T., Konstantinovich Zhavnerko G., Birren B., Cassell GH, Earl AM, Hoffner S., and Farnia P. International journal of mycobacteriology, 2016/03/01, Volume 5, Issue 1, p.66-73, (2016) Read More / View Supplemental Materials
Abstract
Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction.Winglee, K., Manson McGuire A., Maiga M., Abeel T., Shea T., Desjardins CA, Diarra B., Baya B., Sanogo M., Diallo S., Earl AM, and Bishai WR PLoS neglected tropical diseases, 2016/01/01, Volume 10, Issue 1, p.e0004332, (2016) Read More / View Supplemental Materials
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2015
Complete Genome Sequences and Analysis of the Fusobacterium nucleatum subspecies animalis 7-1 Bacteriophage ɸFunu1 and ɸFunu2.Cochrane, K., McGuire AM, Priest ME, Abouelleil A., Cerqueira GC, Lo R., Earl AM, and Allen-Vercoe E. Anaerobe, 2015/11/03, (2015) Read More / View Supplemental Materials
Abstract
Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal.Cohen, KA, Abeel T., Manson McGuire A., Desjardins CA, Munsamy V., Shea TP, Walker BJ, Bantubani N., Almeida DV, Alvarado L., Chapman SB, Mvelase NR, Duffy EY, FitzGerald MG, Govender P., Gujja S., Hamilton S., Howarth C., Larimer JD, Maharaj K., et al. PLoS medicine, 2015/09/01, Volume 12, Issue 9, p.e1001880, (2015) Read More / View Supplemental Materials
Abstract
Fatal nosocomial MDR TB identified through routine genetic analysis and whole-genome sequencing.Williams, OM, Abeel T., Casali N., Cohen K., Pym AS, Mungall SB, Desjardins CA, Banerjee A., Drobniewski F., Earl AM, and Cooke GS Emerging infectious diseases, 2015/06/01, Volume 21, Issue 6, p.1082-4, (2015) Read More / View Supplemental Materials
High-quality draft genome sequences of five anaerobic oral bacteria and description of Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae.Sizova, MV, Chilaka A., Earl AM, Doerfert SN, Muller PA, Torralba M., McCorrison JM, Durkin AS, Nelson KE, and Epstein SS Standards in genomic sciences, 2015/01/01, Volume 10, p.37, (2015) Read More / View Supplemental Materials
Abstract
2014
Unencapsulated Streptococcus pneumoniae from conjunctivitis encode variant traits and belong to a distinct phylogenetic cluster.Valentino, MD, McGuire AM, Earl AM, and Gilmore MS Nature communications, 2014/11/12, Volume 5, p.5411, (2014) Read More / View Supplemental Materials
Abstract
Evolution of invasion in a diverse set of fusobacterium species.Manson McGuire, A., Cochrane K., Griggs AD, Haas BJ, Abeel T., Zeng Q., Birren BW, Allen-Vercoe E., and Earl AM mBio, 2014/11/04, Volume 5, Issue 6, (2014) Read More / View Supplemental Materials
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Sporulation during growth in a gut isolate of Bacillus subtilis.Serra, CR, Earl AM, Barbosa TM, Kolter R., and Henriques AO Journal of bacteriology, 2014/09/15, (2014) Read More / View Supplemental Materials
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Draft genome sequences of six enterohepatic helicobacter species isolated from humans and one from rhesus macaques.Shen, Z., Sheh A., Young SK, Abouelliel A., Ward DV, Earl AM, and Fox JG Genome announcements, 2014/09/11, Volume 2, Issue 5, (2014) Read More / View Supplemental Materials
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Oribacterium parvum sp. nov. and Oribacterium asaccharolyticum sp. nov., obligately anaerobic bacteria from the human oral cavity, and emended description of the genus Oribacterium.Sizova, MV, Muller PA, Stancyk D., Panikov NS, Mandalakis M., Hazen A., Hohmann T., Doerfert SN, Fowle W., Earl AM, Nelson KE, and Epstein SS International journal of systematic and evolutionary microbiology, 2014/08/01, Volume 64, Issue Pt 8, p.2642-9, (2014) Read More / View Supplemental Materials
Abstract
Evidence of Extensive DNA Transfer between Bacteroidales Species within the Human Gut.Coyne, MJ, Zitomersky NL, McGuire AM, Earl AM, and Comstock LE mBio, 2014/06/17, Volume 5, Issue 3, (2014) Read More / View Supplemental Materials
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Relating the metatranscriptome and metagenome of the human gut.Franzosa, EA, Morgan XC, Segata N., Waldron L., Reyes J., Earl AM, Giannoukos G., Ciulla D., Gevers D., Izard J., Garrett WS, Chan AT, and Huttenhower C. Proceedings of the National Academy of Sciences of the United States of America, 2014/06/03, Volume 111, Issue 22, p.E2329-38, (2014) Read More / View Supplemental Materials
Abstract
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Walker, BJ, Abeel T., Shea T., Priest M., Abouelliel A., Sakthikumar S., Cuomo CA, Zeng Q., Wortman J., Young SK, and Earl AM PloS one, 2014/01/01, Volume 9, Issue 11, p.e112963, (2014) Read More / View Supplemental Materials
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2013
High-Quality Draft Genome Sequence of Vagococcus lutrae Strain LBD1, Isolated from the Largemouth Bass Micropterus salmoides.Lebreton, F., Valentino MD, Duncan LB, Zeng Q., Manson McGuire A., Earl AM, and Gilmore MS Genome announcements, 2013/12/26, Volume 1, Issue 6, (2013) Read More / View Supplemental Materials
Abstract
Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains.Lebreton, F., McGuire AM, Godfrey P., Griggs A., Cheng L., Saif S., Young S., Zeng Q., Wortman J., Birren B., Earl AM, and Gilmore MS mBio, 2013/08/20, Volume 4, Issue 4, (2013) Read More / View Supplemental Materials
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2012
The "most wanted" taxa from the human microbiome for whole genome sequencing.Fodor, AA, DeSantis TZ, Wylie KM, Badger JH, Ye Y., Hepburn T., Hu P., Sodergren E., Liolios K., Huot-Creasy H., Birren BW, and Earl AM PloS one, 2012/01/01, Volume 7, Issue 7, p.e41294, (2012) Read More / View Supplemental Materials
Abstract
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes.Giannoukos, G., Ciulla DM, Huang K., Haas BJ, Izard J., Levin JZ, Livny J., Earl AM, Gevers D., Ward DV, Nusbaum C., Birren BW, and Gnirke A. Genome biology, 2012/01/01, Volume 13, Issue 3, p.R23, (2012) Read More / View Supplemental Materials
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The success of acinetobacter species; genetic, metabolic and virulence attributes.Peleg, AY, de Breij A., Adams MD, Cerqueira GM, Mocali S., Nibbering PH, Earl AM, Ward DV, Paterson DL, Seifert H., and Dijkshoorn L. PloS one, 2012/01/01, Volume 7, Issue 10, p.e46984, (2012) Read More / View Supplemental Materials
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Whole genome characterization of the mechanisms of daptomycin resistance in clinical and laboratory derived isolates of Staphylococcus aureus.Peleg, AY, Miyakis S., Ward DV, Earl AM, Rubio A., Cameron DR, Pillai S., Moellering RC Jr, and Eliopoulos GM PloS one, 2012/01/01, Volume 7, Issue 1, p.e28316, (2012) Read More / View Supplemental Materials
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2011
High quality draft genome sequence of Segniliparus rugosus CDC 945(T)= (ATCC BAA-974(T)).Earl, AM, Desjardins CA, FitzGerald MG, Arachchi HM, Zeng Q., Mehta T., Griggs A., Birren BW, Toney NC, Carr J., Posey J., and Butler WR Standards in genomic sciences, 2011/12/31, Volume 5, Issue 3, p.389-97, (2011) Read More / View Supplemental Materials
Abstract
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma.Kostic, AD, Gevers D., Pedamallu CS, Michaud M., Duke F., Earl AM, Ojesina AI, Jung J., Bass AJ, Tabernero J., Baselga J., Liu C., Shivdasani RA, Ogino S., Birren BW, Huttenhower C., Garrett WS, and Meyerson M. Genome research, 2011/10/18, (2011) Read More / View Supplemental Materials
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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.Haas, BJ, Gevers D., Earl AM, Feldgarden M., Ward DV, Giannoukos G., Ciulla D., Tabbaa D., Highlander SK, Sodergren E., Methé B., DeSantis TZ, Human Microbiome Consortium, Petrosino JF, Knight R., and Birren BW Genome research, 2011/03/01, Volume 21, Issue 3, p.494-504, (2011) Read More / View Supplemental Materials
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2010
A catalog of reference genomes from the human microbiome.Human Microbiome Jumpstart Reference Strains, Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M., Sodergren E., Chinwalla AT, Feldgarden M., Gevers D., Haas BJ, Madupu R., Ward DV, Birren BW, Gibbs RA, Methe B., Petrosino JF, et al. Science (New York, N.Y.), 2010/05/21, Volume 328, Issue 5981, p.994-9, (2010) Read More / View Supplemental Materials
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  • Showing 1-27 of 27 Results