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2014
Advancing the microbiome research community.Huttenhower, C., Knight R., Brown CT, Caporaso JG, Clemente JC, Gevers D., Franzosa EA, Kelley ST, Knights D., Ley RE, Mahurkar A., Ravel J., Scientists for Advancement of Microbiome Research, and White O. Cell, 2014/10/09, Volume 159, Issue 2, p.227-30, (2014) Read More / View Supplemental Materials
Abstract
Relating the metatranscriptome and metagenome of the human gut.Franzosa, EA, Morgan XC, Segata N., Waldron L., Reyes J., Earl AM, Giannoukos G., Boylan MR, Ciulla D., Gevers D., Izard J., Garrett WS, Chan AT, and Huttenhower C. Proceedings of the National Academy of Sciences of the United States of America, 2014/05/19, (2014) Read More / View Supplemental Materials
Abstract
The treatment-naive microbiome in new-onset Crohn's disease.Gevers, D., Kugathasan S., Denson LA, Vázquez-Baeza Y., Van Treuren W., Ren B., Schwager E., Knights D., Song SJ, Yassour M., Morgan XC, Kostic AD, Luo C., González A., McDonald D., Haberman Y., Walters T., Baker S., Rosh J., Stephens M., et al. Cell host & microbe, 2014/03/12, Volume 15, Issue 3, p.382-92, (2014) Read More / View Supplemental Materials
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The Microbiome in Inflammatory Bowel Diseases: Current Status and the Future Ahead.Kostic, AD, Xavier RJ, and Gevers D. Gastroenterology, 2014/02/18, (2014) Read More / View Supplemental Materials
Abstract
Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission.Rooks, MG, Veiga P., Wardwell-Scott LH, Tickle T., Segata N., Michaud M., Gallini CA, Beal C., van Hylckama-Vlieg JE, Ballal SA, Morgan XC, Glickman JN, Gevers D., Huttenhower C., and Garrett WS The ISME journal, 2014/02/06, (2014) Read More / View Supplemental Materials
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2013
MetaRef: a pan-genomic database for comparative and community microbial genomics.Huang, K., Brady A., Mahurkar A., White O., Gevers D., Huttenhower C., and Segata N. Nucleic acids research, 2013/11/06, (2013) Read More / View Supplemental Materials
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2012
Bioinformatics for the human microbiome project.Gevers, D., Pop M., Schloss PD, and Huttenhower C. PLoS computational biology, 2012/11/01, Volume 8, Issue 11, p.e1002779, (2012) Read More / View Supplemental Materials
The human microbiome project: a community resource for the healthy human microbiome.Gevers, D., Knight R., Petrosino JF, Huang K., McGuire AL, Birren BW, Nelson KE, White O., Methé BA, and Huttenhower C. PLoS biology, 2012/08/01, Volume 10, Issue 8, p.e1001377, (2012) Read More / View Supplemental Materials
Abstract
Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.Papa, E., Docktor M., Smillie C., Weber S., Preheim SP, Gevers D., Giannoukos G., Ciulla D., Tabbaa D., Ingram J., Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A., and Alm EJ PloS one, 2012/01/01, Volume 7, Issue 6, p.e39242, (2012) Read More / View Supplemental Materials
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2011
Experimental and analytical tools for studying the human microbiome.Kuczynski, J., Lauber CL, Walters WA, Parfrey LW, Clemente JC, Gevers D., and Knight R. Nature reviews. Genetics, 2011/12/16, Volume 13, Issue 1, p.47-58, (2011) Read More / View Supplemental Materials
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Genomic analysis identifies association of Fusobacterium with colorectal carcinoma.Kostic, AD, Gevers D., Pedamallu CS, Michaud M., Duke F., Earl AM, Ojesina AI, Jung J., Bass AJ, Tabernero J., Baselga J., Liu C., Shivdasani RA, Ogino S., Birren BW, Huttenhower C., Garrett WS, and Meyerson M. Genome research, 2011/10/18, (2011) Read More / View Supplemental Materials
Abstract
The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment.Sczesnak, A., Segata N., Qin X., Gevers D., Petrosino JF, Huttenhower C., Littman DR, and Ivanov II Cell host & microbe, 2011/09/15, Volume 10, Issue 3, p.260-72, (2011) Read More / View Supplemental Materials
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Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development.Holder, JW, Ulrich JC, DeBono AC, Godfrey PA, Desjardins CA, Zucker J., Zeng Q., Leach AL, Ghiviriga I., Dancel C., Abeel T., Gevers D., Kodira CD, Desany B., Affourtit JP, Birren BW, and Sinskey AJ PLoS genetics, 2011/09/01, Volume 7, Issue 9, p.e1002219, (2011) Read More / View Supplemental Materials
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Metagenomic biomarker discovery and explanation.Segata, N., Izard J., Waldron L., Gevers D., Miropolsky L., Garrett WS, and Huttenhower C. Genome biology, 2011/06/24, Volume 12, Issue 6, p.R60, (2011) Read More / View Supplemental Materials
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Distinct microbiome in pouchitis compared to healthy pouches in ulcerative colitis and familial adenomatous polyposis.Zella, GC, Hait EJ, Glavan T., Gevers D., Ward DV, Kitts CL, and Korzenik JR Inflammatory bowel diseases, 2011/05/01, Volume 17, Issue 5, p.1092-100, (2011) Read More / View Supplemental Materials
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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.Yilmaz, P., Kottmann R., Field D., Knight R., Cole JR, Amaral-Zettler L., Gilbert JA, Karsch-Mizrachi I., Johnston A., Cochrane G., Vaughan R., Hunter C., Park J., Morrison N., Rocca-Serra P., Sterk P., Arumugam M., Bailey M., Baumgartner L., Birren BW, et al. Nature biotechnology, 2011/05/01, Volume 29, Issue 5, p.415-20, (2011) Read More / View Supplemental Materials
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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.Haas, BJ, Gevers D., Earl AM, Feldgarden M., Ward DV, Giannoukos G., Ciulla D., Tabbaa D., Highlander SK, Sodergren E., Methé B., DeSantis TZ, Human Microbiome Consortium, Petrosino JF, Knight R., and Birren BW Genome research, 2011/03/01, Volume 21, Issue 3, p.494-504, (2011) Read More / View Supplemental Materials
Abstract
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies.Schloss, PD, Gevers D., and Westcott SL PloS one, 2011/01/01, Volume 6, Issue 12, p.e27310, (2011) Read More / View Supplemental Materials
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2010
A catalog of reference genomes from the human microbiome.Human Microbiome Jumpstart Reference Strains, Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M., Sodergren E., Chinwalla AT, Feldgarden M., Gevers D., Haas BJ, Madupu R., Ward DV, Birren BW, Gibbs RA, Methe B., Petrosino JF, et al. Science (New York, N.Y.), 2010/05/21, Volume 328, Issue 5981, p.994-9, (2010) Read More / View Supplemental Materials
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Vibrio chromosomes share common history.Kirkup BC, Jr, Chang L., Chang S., Gevers D., and Polz MF BMC microbiology, 2010/05/10, Volume 10, p.137, (2010) Read More / View Supplemental Materials
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High-quality draft genome sequences of 28 Enterococcus sp. isolates.Palmer, KL, Carniol K., Manson JM, Heiman D., Shea T., Young S., Zeng Q., Gevers D., Feldgarden M., Birren B., and Gilmore MS Journal of bacteriology, 2010/05/01, Volume 192, Issue 9, p.2469-70, (2010) Read More / View Supplemental Materials
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2008
The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571.Lee, KB, De Backer P., Aono T., Liu CT, Suzuki S., Suzuki T., Kaneko T., Yamada M., Tabata S., Kupfer DM, Najar FZ, Wiley GB, Roe B., Binnewies TT, Ussery DW, D'Haeze W., Herder JD, Gevers D., Vereecke D., Holsters M., et al. BMC genomics, 2008/06/04, Volume 9, p.271, (2008) Read More / View Supplemental Materials
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Resource partitioning and sympatric differentiation among closely related bacterioplankton.Hunt, DE, David LA, Gevers D., Preheim SP, Alm EJ, and Polz MF Science (New York, N.Y.), 2008/05/23, Volume 320, Issue 5879, p.1081-5, (2008) Read More / View Supplemental Materials
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Conservation of the chitin utilization pathway in the Vibrionaceae.Hunt, DE, Gevers D., Vahora NM, and Polz MF Applied and environmental microbiology, 2008/01/01, Volume 74, Issue 1, p.44-51, (2008) Read More / View Supplemental Materials
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  • Showing 1-24 of 24 Results