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2013
Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily.Goldberg, JM, Griggs AD, Smith JL, Haas BJ, Wortman JR, and Zeng Q. Bioinformatics (Oxford, England), 2013/08/13, (2013) Read More / View Supplemental Materials
Abstract
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.Haas, BJ, Papanicolaou A., Yassour M., Grabherr M., Blood PD, Bowden J., Couger MB, Eccles D., Li B., Lieber M., Macmanes MD, Ott M., Orvis J., Pochet N., Strozzi F., Weeks N., Westerman R., William T., Dewey CN, Henschel R., et al. Nature protocols, 2013/08/01, Volume 8, Issue 8, p.1494-512, (2013) Read More / View Supplemental Materials
Abstract
Distinctive Expansion of Potential Virulence Genes in the Genome of the Oomycete Fish Pathogen Saprolegnia parasitica.Jiang, RH, de Bruijn I., Haas BJ, Belmonte R., Löbach L., Christie J., van den Ackerveken G., Bottin A., Bulone V., Díaz-Moreno SM, Dumas B., Fan L., Gaulin E., Govers F., Grenville-Briggs LJ, Horner NR, Levin JZ, Mammella M., Meijer HJ, Morris P., et al. PLoS genetics, 2013/06/01, Volume 9, Issue 6, p.e1003272, (2013) Read More / View Supplemental Materials
Abstract
Genomics of Loa loa, a Wolbachia-free filarial parasite of humans.Desjardins, CA, Cerqueira GC, Goldberg JM, Dunning Hotopp JC, Haas BJ, Zucker J., Ribeiro JM, Saif S., Levin JZ, Fan L., Zeng Q., Russ C., Wortman JR, Fink DL, Birren BW, and Nutman TB Nature genetics, 2013/04/26, Volume 45, Issue 5, p.495-500, (2013) Read More / View Supplemental Materials
Abstract
2012
How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?Haas, BJ, Chin M., Nusbaum C., Birren BW, and Livny J. BMC genomics, 2012/12/27, Volume 13, p.734, (2012) Read More / View Supplemental Materials
Abstract
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.Grad, YH, Lipsitch M., Feldgarden M., Arachchi HM, Cerqueira GC, FitzGerald M., Godfrey P., Haas BJ, Murphy CI, Russ C., Sykes S., Walker BJ, Wortman JR, Young S., Zeng Q., Abouelleil A., Bochicchio J., Chauvin S., Desmet T., Gujja S., et al. Proceedings of the National Academy of Sciences of the United States of America, 2012/02/21, Volume 109, Issue 8, p.3065-70, (2012) Read More / View Supplemental Materials
Abstract
'Next-generation' sequencing becomes 'now-generation'.Neafsey, DE, and Haas BJ Genome biology, 2012/01/09, Volume 12, Issue 3, p.303, (2012) Read More / View Supplemental Materials
Abstract
2011
Approaches to Fungal Genome Annotation.Haas, BJ, Zeng Q., Pearson MD, Cuomo CA, and Wortman JR Mycology, 2011/10/03, Volume 2, Issue 3, p.118-141, (2011) Read More / View Supplemental Materials
Abstract
Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.Desjardins, CA, Champion MD, Holder JW, Muszewska A., Goldberg J., Bailão AM, Brigido MM, Ferreira ME, Garcia AM, Grynberg M., Gujja S., Heiman DI, Henn MR, Kodira CD, León-Narváez H., Longo LV, Ma LJ, Malavazi I., Matsuo AL, Morais FV, et al. PLoS genetics, 2011/10/01, Volume 7, Issue 10, p.e1002345, (2011) Read More / View Supplemental Materials
Abstract
Full-length transcriptome assembly from RNA-Seq data without a reference genome.Grabherr, MG, Haas BJ, Yassour M., Levin JZ, Thompson DA, Amit I., Adiconis X., Fan L., Raychowdhury R., Zeng Q., Chen Z., Mauceli E., Hacohen N., Gnirke A., Rhind N., Di Palma F., Birren BW, Nusbaum C., Lindblad-Toh K., Friedman N., et al. Nature biotechnology, 2011/05/15, Volume 29, Issue 7, p.644-52, (2011) Read More / View Supplemental Materials
Abstract
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.Haas, BJ, Gevers D., Earl AM, Feldgarden M., Ward DV, Giannoukos G., Ciulla D., Tabbaa D., Highlander SK, Sodergren E., Methé B., DeSantis TZ, Human Microbiome Consortium, Petrosino JF, Knight R., and Birren BW Genome research, 2011/03/01, Volume 21, Issue 3, p.494-504, (2011) Read More / View Supplemental Materials
Abstract
2010
A catalog of reference genomes from the human microbiome.Human Microbiome Jumpstart Reference Strains, Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M., Sodergren E., Chinwalla AT, Feldgarden M., Gevers D., Haas BJ, Madupu R., Ward DV, Birren BW, Gibbs RA, Methe B., Petrosino JF, et al. Science (New York, N.Y.), 2010/05/21, Volume 328, Issue 5981, p.994-9, (2010) Read More / View Supplemental Materials
Abstract
2009
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.Haas, BJ, Kamoun S., Zody MC, Jiang RH, Handsaker RE, Cano LM, Grabherr M., Kodira CD, Raffaele S., Torto-Alalibo T., Bozkurt TO, Ah-Fong AM, Alvarado L., Anderson VL, Armstrong MR, Avrova A., Baxter L., Beynon J., Boevink PC, Bollmann SR, et al. Nature, 2009/09/17, Volume 461, Issue 7262, p.393-8, (2009) Read More / View Supplemental Materials
Abstract
2008
Analysis of alternative splicing in plants with bioinformatics tools.Haas, BJ Current topics in microbiology and immunology, 2008/01/01, Volume 326, p.17-37, (2008) Read More / View Supplemental Materials
Abstract
  • Showing 1-14 of 14 Results