Scientific Publications

Independent Large Scale Duplications in Multiple M. tuberculosis Lineages Overlapping the Same Genomic Region.Weiner, B., Gomez J., Victor TC, Warren RM, Sloutsky A., Plikaytis BB, Posey JE, van Helden PD, Gey van Pittius NC, Koehrsen M., Sisk P., Stolte C., White J., Gagneux S., Birren B., Hung D., Murray M., and Galagan J. PloS one, 2012/01/01, Volume 7, Issue 2, p.e26038, (2012) Read More / View Supplemental Materials

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Abstract

Methods in comparative genomics: genome correspondence, gene identification and regulatory motif discovery.Kellis, M., Patterson N., Birren B., Berger B., and Lander E. S. Journal of computational biology : a journal of computational molecular cell biology, 2011/12/08, Volume 11, Issue 2-3, p.319-55, (2011) Read More / View Supplemental Materials

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Abstract

High-quality draft genome sequences of 28 Enterococcus sp. isolates.Palmer, KL, Carniol K., Manson JM, Heiman D., Shea T., Young S., Zeng Q., Gevers D., Feldgarden M., Birren B., and Gilmore MS Journal of bacteriology, 2010/05/01, Volume 192, Issue 9, p.2469-70, (2010) Read More / View Supplemental Materials

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Abstract

Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies.Champion, MD, Zeng Q., Nix EB, Nano FE, Keim P., Kodira CD, Borowsky M., Young S., Koehrsen M., Engels R., Pearson M., Howarth C., Larson L., White J., Alvarado L., Forsman M., Bearden SW, Sjöstedt A., Titball R., Michell SL, et al. PLoS pathogens, 2009/05/01, Volume 5, Issue 5, p.e1000459, (2009) Read More / View Supplemental Materials

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Abstract

Genomics of the fungal kingdom: insights into eukaryotic biology.Galagan, JE, Henn MR, Ma LJ, Cuomo CA, and Birren B. Genome research, 2005/12/01, Volume 15, Issue 12, p.1620-31, (2005) Read More / View Supplemental Materials

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Abstract

Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.Vinson, JP, Jaffe DB, O'Neill K., Karlsson EK, Stange-Thomann N., Anderson S., Mesirov J. P., Satoh N., Satou Y., Nusbaum C., Birren B., Galagan JE, and Lander E. S. Genome research, 2005/08/01, Volume 15, Issue 8, p.1127-35, (2005) Read More / View Supplemental Materials

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Abstract

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.Jaillon, O., Aury JM, Brunet F., Petit JL, Stange-Thomann N., Mauceli E., Bouneau L., Fischer C., Ozouf-Costaz C., Bernot A., Nicaud S., Jaffe D., Fisher S., Lutfalla G., Dossat C., Segurens B., Dasilva C., Salanoubat M., Levy M., Boudet N., et al. Nature, 2004/10/21, Volume 431, Issue 7011, p.946-57, (2004) Read More / View Supplemental Materials

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Abstract