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  • Showing 1-18 of 18 Results
2012
Large-scale identification of genetic design strategies using local search.Lun, DS, Rockwell G., Guido NJ, Baym M., Kelner JA, Berger B., Galagan JE, and Church GM Molecular systems biology, 2012/01/09, Volume 5, p.296, (2012) Read More / View Supplemental Materials
Abstract
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts.D'Souza, CA, Kronstad JW, Taylor G., Warren R., Yuen M., Hu G., Jung WH, Sham A., Kidd SE, Tangen K., Lee N., Zeilmaker T., Sawkins J., McVicker G., Shah S., Gnerre S., Griggs A., Zeng Q., Bartlett K., Li W., et al. mBio, 2012/01/06, Volume 2, Issue 1, p.e00342-10, (2012) Read More / View Supplemental Materials
Abstract
Cross-kingdom patterns of alternative splicing and splice recognition.McGuire, AM, Pearson MD, Neafsey DE, and Galagan JE Genome biology, 2012/01/05, Volume 9, Issue 3, p.R50, (2012) Read More / View Supplemental Materials
Abstract
Inferring carbon sources from gene expression profiles using metabolic flux models.Brandes, A., Lun DS, Ip K., Zucker J., Colijn C., Weiner B., and Galagan JE PloS one, 2012/01/01, Volume 7, Issue 5, p.e36947, (2012) Read More / View Supplemental Materials
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2010
TB database 2010: overview and update.Galagan, JE, Sisk P., Stolte C., Weiner B., Koehrsen M., Wymore F., Reddy TB, Zucker JD, Engels R., Gellesch M., Hubble J., Jin H., Larson L., Mao M., Nitzberg M., White J., Zachariah ZK, Sherlock G., Ball CA, and Schoolnik GK Tuberculosis (Edinburgh, Scotland), 2010/07/01, Volume 90, Issue 4, p.225-35, (2010) Read More / View Supplemental Materials
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2009
Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production.Colijn, C., Brandes A., Zucker J., Lun DS, Weiner B., Farhat MR, Cheng TY, Moody DB, Murray M., and Galagan JE PLoS computational biology, 2009/08/01, Volume 5, Issue 8, p.e1000489, (2009) Read More / View Supplemental Materials
Abstract
2008
Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatment-naïve patients.Kuntzen, T., Timm J., Berical A., Lennon N., Berlin AM, Young SK, Lee B., Heckerman D., Carlson J., Reyor LL, Kleyman M., McMahon CM, Birch C., Schulze Zur Wiesch J., Ledlie T., Koehrsen M., Kodira C., Roberts AD, Lauer GM, Rosen HR, et al. Hepatology (Baltimore, Md.), 2008/12/01, Volume 48, Issue 6, p.1769-78, (2008) Read More / View Supplemental Materials
Abstract
Conserved secondary structures in Aspergillus.McGuire, AM, and Galagan JE PloS one, 2008/07/30, Volume 3, Issue 7, p.e2812, (2008) Read More / View Supplemental Materials
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2007
Conrad: gene prediction using conditional random fields.DeCaprio, D., Vinson JP, Pearson MD, Montgomery P., Doherty M., and Galagan JE Genome research, 2007/09/01, Volume 17, Issue 9, p.1389-98, (2007) Read More / View Supplemental Materials
Abstract
Dual modes of natural selection on upstream open reading frames.Neafsey, DE, and Galagan JE Molecular biology and evolution, 2007/08/01, Volume 24, Issue 8, p.1744-51, (2007) Read More / View Supplemental Materials
Abstract
Positive selection for unpreferred codon usage in eukaryotic genomes.Neafsey, DE, and Galagan JE BMC evolutionary biology, 2007/07/18, Volume 7, p.119, (2007) Read More / View Supplemental Materials
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A genome-wide map of diversity in Plasmodium falciparum.Volkman, SK, Sabeti PC, DeCaprio D., Neafsey DE, Schaffner SF, Milner DA Jr, Daily JP, Sarr O., Ndiaye D., Ndir O., Mboup S., Duraisingh MT, Lukens A., Derr A., Stange-Thomann N., Waggoner S., Onofrio R., Ziaugra L., Mauceli E., Gnerre S., et al. Nature genetics, 2007/01/01, Volume 39, Issue 1, p.113-9, (2007) Read More / View Supplemental Materials
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2006
Combo: a whole genome comparative browser.Engels, R., Yu T., Burge C., Mesirov J. P., DeCaprio D., and Galagan JE Bioinformatics (Oxford, England), 2006/07/15, Volume 22, Issue 14, p.1782-3, (2006) Read More / View Supplemental Materials
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2005
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.Galagan, JE, Calvo SE, Cuomo C., Ma LJ, Wortman JR, Batzoglou S., Lee SI, Baştürkmen M., Spevak CC, Clutterbuck J., Kapitonov V., Jurka J., Scazzocchio C., Farman M., Butler J., Purcell S., Harris S., Braus GH, Draht O., Busch S., et al. Nature, 2005/12/22, Volume 438, Issue 7071, p.1105-15, (2005) Read More / View Supplemental Materials
Abstract
Genomics of the fungal kingdom: insights into eukaryotic biology.Galagan, JE, Henn MR, Ma LJ, Cuomo CA, and Birren B. Genome research, 2005/12/01, Volume 15, Issue 12, p.1620-31, (2005) Read More / View Supplemental Materials
Abstract
Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.Vinson, JP, Jaffe DB, O'Neill K., Karlsson EK, Stange-Thomann N., Anderson S., Mesirov J. P., Satoh N., Satou Y., Nusbaum C., Birren B., Galagan JE, and Lander E. S. Genome research, 2005/08/01, Volume 15, Issue 8, p.1127-35, (2005) Read More / View Supplemental Materials
Abstract
Improving genome annotations using phylogenetic profile anomaly detection.Mikkelsen, TS, Galagan JE, and Mesirov J. P. Bioinformatics (Oxford, England), 2005/02/15, Volume 21, Issue 4, p.464-70, (2005) Read More / View Supplemental Materials
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2004
RIP: the evolutionary cost of genome defense.Galagan, JE, and Selker EU Trends in genetics : TIG, 2004/09/01, Volume 20, Issue 9, p.417-23, (2004) Read More / View Supplemental Materials
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  • Showing 1-18 of 18 Results