New Publications

Amplification of CRKL Induces Transformation and Epidermal Growth Factor Receptor Inhibitor Resistance in Human Non-Small Cell Lung Cancers.
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A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.
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Expression of the p53 Target CDIP Correlates with Sensitivity to TNFα-Induced Apoptosis in Cancer Cells.
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Absolute quantification of somatic DNA alterations in human cancer.
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RNA-SeQC: RNA-seq metrics for quality control and process optimization.
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Scientific Publications

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2012

Independent Large Scale Duplications in Multiple M. tuberculosis Lineages Overlapping the Same Genomic Region.Weiner, B., Gomez J., Victor TC, Warren RM, Sloutsky A., Plikaytis BB, Posey JE, van Helden PD, Gey van Pittius NC, Koehrsen M., Sisk P., Stolte C., White J., Gagneux S., Birren B., Hung D., Murray M., and Galagan J. PloS one, 2012/01/01, Volume 7, Issue 2, p.e26038, (2012) Read More / View Supplemental Materials

2010

Population genomic sequencing of Coccidioides fungi reveals recent hybridization and transposon control.Neafsey, DE, Barker BM, Sharpton TJ, Stajich JE, Park DJ, Whiston E., Hung CY, McMahan C., White J., Sykes S., Heiman D., Young S., Zeng Q., Abouelleil A., Aftuck L., Bessette D., Brown A., FitzGerald M., Lui A., Macdonald JP, et al. Genome research, 2010/07/01, Volume 20, Issue 7, p.938-46, (2010) Read More / View Supplemental Materials

TB database 2010: overview and update.Galagan, JE, Sisk P., Stolte C., Weiner B., Koehrsen M., Wymore F., Reddy TB, Zucker JD, Engels R., Gellesch M., Hubble J., Jin H., Larson L., Mao M., Nitzberg M., White J., Zachariah ZK, Sherlock G., Ball CA, and Schoolnik GK Tuberculosis (Edinburgh, Scotland), 2010/07/01, Volume 90, Issue 4, p.225-35, (2010) Read More / View Supplemental Materials

2009

Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies.Champion, MD, Zeng Q., Nix EB, Nano FE, Keim P., Kodira CD, Borowsky M., Young S., Koehrsen M., Engels R., Pearson M., Howarth C., Larson L., White J., Alvarado L., Forsman M., Bearden SW, Sjöstedt A., Titball R., Michell SL, et al. PLoS pathogens, 2009/05/01, Volume 5, Issue 5, p.e1000459, (2009) Read More / View Supplemental Materials