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2016
Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance.Desjardins, CA, Cohen KA, Munsamy V., Abeel T., Maharaj K., Walker BJ, Shea TP, Almeida DV, Manson AL, Salazar A., Padayatchi N., O'Donnell MR, Mlisana KP, Wortman J., Birren BW, Grosset J., Earl AM, and Pym AS Nature genetics, 2016/04/11, (2016) Read More / View Supplemental Materials
Abstract
2015
Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal.Cohen, KA, Abeel T., Manson McGuire A., Desjardins CA, Munsamy V., Shea TP, Walker BJ, Bantubani N., Almeida DV, Alvarado L., Chapman SB, Mvelase NR, Duffy EY, FitzGerald MG, Govender P., Gujja S., Hamilton S., Howarth C., Larimer JD, Maharaj K., et al. PLoS medicine, 2015/09/01, Volume 12, Issue 9, p.e1001880, (2015) Read More / View Supplemental Materials
Abstract
2012
Finished bacterial genomes from shotgun sequence data.Ribeiro, F., Przybylski D., Yin S., Sharpe T., Gnerre S., Abouelleil A., Berlin AM, Montmayeur A., Shea TP, Walker BJ, Young SK, Russ C., Maccallum I., Nusbaum C., and Jaffe DB Genome research, 2012/07/24, (2012) Read More / View Supplemental Materials
Abstract
Paired-end sequencing of Fosmid libraries by Illumina.Williams, LJ, Tabbaa DG, Li N., Berlin AM, Shea TP, Maccallum I., Lawrence MS, Drier Y., Getz G., Young SK, Jaffe DB, Nusbaum C., and Gnirke A. Genome research, 2012/07/17, (2012) Read More / View Supplemental Materials
Abstract
Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection.Henn, MR, Boutwell CL, Charlebois P., Lennon NJ, Power KA, Macalalad AR, Berlin AM, Malboeuf CM, Ryan EM, Gnerre S., Zody MC, Erlich RL, Green LM, Berical A., Wang Y., Casali M., Streeck H., Bloom AK, Dudek T., Tully D., et al. PLoS pathogens, 2012/03/01, Volume 8, Issue 3, p.e1002529, (2012) Read More / View Supplemental Materials
Abstract
2011
High-quality draft assemblies of mammalian genomes from massively parallel sequence data.Gnerre, S., Maccallum I., Przybylski D., Ribeiro FJ, Burton JN, Walker BJ, Sharpe T., Hall G., Shea TP, Sykes S., Berlin AM, Aird D., Costello M., Daza R., Williams L., Nicol R., Gnirke A., Nusbaum C., Lander E. S., and Jaffe DB Proceedings of the National Academy of Sciences of the United States of America, 2011/01/25, Volume 108, Issue 4, p.1513-8, (2011) Read More / View Supplemental Materials
Abstract
2009
ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads.Maccallum, I., Przybylski D., Gnerre S., Burton J., Shlyakhter I., Gnirke A., Malek J., McKernan K., Ranade S., Shea TP, Williams L., Young S., Nusbaum C., and Jaffe DB Genome biology, 2009/01/01, Volume 10, Issue 10, p.R103, (2009) Read More / View Supplemental Materials
Abstract
  • Showing 1-7 of 7 Results