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2016
Whole Exome Sequencing Identifies TSC1/TSC2 Biallelic Loss as the Primary and Sufficient Driver Event for Renal Angiomyolipoma Development.Giannikou, K., Malinowska IA, Pugh TJ, Yan R., Tseng YY, Oh C., Kim J., Tyburczy ME, Chekaluk Y., Liu Y., Alesi N., Finlay GA, Wu CL, Signoretti S., Meyerson M., Getz G., Boehm JS, Henske EP, and Kwiatkowski DJ PLoS genetics, 2016/08/01, Volume 12, Issue 8, p.e1006242, (2016) Read More / View Supplemental Materials
Abstract
Association of tumour microRNA profiling with outcomes in patients with advanced urothelial carcinoma receiving first-line platinum-based chemotherapy.Bellmunt, J., Zhou CW, Mullane SA, Werner L., Taplin ME, Fay AP, Choueiri TK, Orsola A., Takeda DY, Hahn WC, Kim J., Sonpavde G., and Bowden M. British journal of cancer, 2016/06/28, Volume 115, Issue 1, p.12-9, (2016) Read More / View Supplemental Materials
Abstract
Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas.Campbell, JD, Alexandrov A., Kim J., Wala J., Berger AH, Pedamallu CS, Shukla SA, Guo G., Brooks AN, Murray BA, Imielinski M., Hu X., Ling S., Akbani R., Rosenberg M., Cibulskis C., Ramachandran A., Collisson EA, Kwiatkowski DJ, Lawrence MS, et al. Nature genetics, 2016/05/09, (2016) Read More / View Supplemental Materials
Abstract
Somatic ERCC2 mutations are associated with a distinct genomic signature in urothelial tumors.Kim, J., Mouw KW, Polak P., Braunstein LZ, Kamburov A., Tiao G., Kwiatkowski DJ, Rosenberg JE, Van Allen EM, D'Andrea AD, and Getz G. Nature genetics, 2016/04/25, (2016) Read More / View Supplemental Materials
Abstract
Whole exome sequencing of urachal adenocarcinoma reveals recurrent NF1 mutations.Singh, H., Liu Y., Xiao X., Lin L., Kim J., Van Hummelen P., Wu CL, Bass AJ, and Saylor PJ Oncotarget, 2016/04/07, (2016) Read More / View Supplemental Materials
Abstract
Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair.Haradhvala, NJ, Polak P., Stojanov P., Covington KR, Shinbrot E., Hess JM, Rheinbay E., Kim J., Maruvka YE, Braunstein LZ, Kamburov A., Hanawalt PC, Wheeler DA, Koren A., Lawrence MS, and Getz G. Cell, 2016/01/20, (2016) Read More / View Supplemental Materials
Abstract
2015
Whole-genome sequencing reveals activation-induced cytidine deaminase signatures during indolent chronic lymphocytic leukaemia evolution.Kasar, S., Kim J., Improgo R., Tiao G., Polak P., Haradhvala N., Lawrence MS, Kiezun A., Fernandes SM, Bahl S., Sougnez C., Gabriel S., Lander E. S., Kim HT, Getz G., and Brown JR Nature communications, 2015/12/07, Volume 6, p.8866, (2015) Read More / View Supplemental Materials
Abstract
Invasive Bladder Cancer: Genomic Insights and Therapeutic Promise.Kim, J., Akbani R., Creighton CJ, Lerner SP, Weinstein J. N., Getz G., and Kwiatkowski DJ Clinical cancer research : an official journal of the American Association for Cancer Research, 2015/10/15, Volume 21, Issue 20, p.4514-24, (2015) Read More / View Supplemental Materials
Abstract
PRC2 Is Required to Maintain Expression of the Maternal Gtl2-Rian-Mirg Locus by Preventing De Novo DNA Methylation in Mouse Embryonic Stem Cells.Das, PP, Hendrix DA, Apostolou E., Buchner AH, Canver MC, Beyaz S., Ljuboja D., Kuintzle R., Kim W., Karnik R., Shao Z., Xie H., Xu J., De Los Angeles A., Zhang Y., Choe J., Jun DL, Shen X., Gregory RI, Daley GQ, et al. Cell reports, 2015/08/19, (2015) Read More / View Supplemental Materials
Abstract
An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers.Chan, K., Roberts SA, Klimczak LJ, Sterling JF, Saini N., Malc EP, Kim J., Kwiatkowski DJ, Fargo DC, Mieczkowski PA, Getz G., and Gordenin DA Nature genetics, 2015/08/10, (2015) Read More / View Supplemental Materials
Abstract
CCL2 Promotes Colorectal Carcinogenesis by Enhancing Polymorphonuclear Myeloid-Derived Suppressor Cell Population and Function.Chun, E., Lavoie S., Michaud M., Gallini CA, Kim J., Soucy G., Odze R., Glickman JN, and Garrett WS Cell reports, 2015/07/14, Volume 12, Issue 2, p.244-257, (2015) Read More / View Supplemental Materials
Abstract
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.Cancer Genome Atlas Research, Network, Brat DJ, Verhaak RG, Aldape KD, Yung WK, Salama SR, Cooper LA, Rheinbay E., Miller CR, Vitucci M., Morozova O., Robertson AG, Noushmehr H., Laird PW, Cherniack AD, Akbani R., Huse JT, Ciriello G., Poisson LM, Barnholtz-Sloan JS, et al. The New England journal of medicine, 2015/06/25, Volume 372, Issue 26, p.2481-98, (2015) Read More / View Supplemental Materials
Abstract
Breakpoint mapping by whole genome sequencing identifies PTH2R gene disruption in a patient with midline craniosynostosis and a de novo balanced chromosomal rearrangement.Kim, J., Won HH, Kim Y., Choi JR, Yu N., and Lee KA Journal of medical genetics, 2015/06/04, (2015) Read More / View Supplemental Materials
Abstract
Functional genome-wide siRNA screen identifies KIAA0586 as mutated in Joubert syndrome.Roosing, S., Hofree M., Kim S., Scott E., Copeland B., Romani M., Silhavy JL, Rosti RO, Schroth J., Mazza T., Miccinilli E., Zaki MS, Swoboda KJ, Milisa-Drautz J., Dobyns WB, Mikati M., İncecik F., Azam M., Borgatti R., Romaniello R., et al. eLife, 2015/05/30, Volume 4, (2015) Read More / View Supplemental Materials
Abstract
Hypoxia drives transient site-specific copy gain and drug-resistant gene expression.Black, JC, Atabakhsh E., Kim J., Biette KM, Van Rechem C., Ladd B., Burrowes PD, Donado C., Mattoo H., Kleinstiver BP, Song B., Andriani G., Joung JK, Iliopoulos O., Montagna C., Pillai S., Getz G., and Whetstine JR Genes & development, 2015/05/15, Volume 29, Issue 10, p.1018-31, (2015) Read More / View Supplemental Materials
Abstract
Entropic Description of Gas Hydrate Ice-Liquid Equilibrium via Enhanced Sampling of Coexisting Phases.Małolepsza, E., Kim J., and Keyes T. Physical review letters, 2015/05/01, Volume 114, Issue 17, p.170601, (2015) Read More / View Supplemental Materials
Abstract
Determinants of the CmoB carboxymethyl transferase utilized for selective tRNA wobble modification.Kim, J., Xiao H., Koh J., Wang Y., Bonanno JB, Thomas K., Babbitt PC, Brown S., Lee YS, and Almo SC Nucleic acids research, 2015/04/08, (2015) Read More / View Supplemental Materials
Abstract
2014
Optogenetic mapping of cerebellar inhibitory circuitry reveals spatially biased coordination of interneurons via electrical synapses.Kim, J., Lee S., Tsuda S., Zhang X., Asrican B., Gloss B., Feng G., and Augustine GJ Cell reports, 2014/06/12, Volume 7, Issue 5, p.1601-13, (2014) Read More / View Supplemental Materials
Abstract
Exome sequencing of pleuropulmonary blastoma reveals frequent biallelic loss of TP53 and two hits in DICER1 resulting in retention of 5p-derived miRNA hairpin loop sequences.Pugh, TJ, Yu W., Yang J., Field AL, Ambrogio L., Carter SL, Cibulskis K., Giannikopoulos P., Kiezun A., Kim J., McKenna A., Nickerson E., Getz G., Hoffher S., Messinger YH, Dehner LP, Roberts CW, Rodriguez-Galindo C., Williams GM, Rossi CT, et al. Oncogene, 2014/06/09, (2014) Read More / View Supplemental Materials
Abstract
Limit of metastability for liquid and vapor phases of water.Cho, WJ, Kim J., Lee J., Keyes T., Straub JE, and Kim KS Physical review letters, 2014/04/18, Volume 112, Issue 15, p.157802, (2014) Read More / View Supplemental Materials
Abstract
Src Mutation Induces Acquired Lapatinib Resistance in ERBB2-Amplified Human Gastroesophageal Adenocarcinoma Models.Hong, YS, Kim J., Pectasides E., Fox C., Hong SW, Ma Q., Wong GS, Peng S., Stachler MD, Thorner AR, Van Hummelen P., and Bass AJ PloS one, 2014/01/01, Volume 9, Issue 10, p.e109440, (2014) Read More / View Supplemental Materials
Abstract
2013
Integrative and Comparative Genomic Analysis of Lung Squamous Cell Carcinomas in East Asian Patients.Kim, Y., Hammerman PS, Kim J., Yoon JA, Lee Y., Sun JM, Wilkerson MD, Pedamallu CS, Cibulskis K., Yoo YK, Lawrence MS, Stojanov P., Carter SL, McKenna A., Stewart C., Sivachenko AY, Oh IJ, Kim HK, Choi YS, Kim K., et al. Journal of clinical oncology : official journal of the American Society of Clinical Oncology, 2013/12/09, (2013) Read More / View Supplemental Materials
Abstract
Oncogenic and drug-sensitive NTRK1 rearrangements in lung cancer.Vaishnavi, A., Capelletti M., Le AT, Kako S., Butaney M., Ercan D., Mahale S., Davies KD, Aisner DL, Pilling AB, Berge EM, Kim J., Sasaki H., Park SI, Kryukov G., Garraway LA, Hammerman PS, Haas J., Andrews SW, Lipson D., et al. Nature medicine, 2013/10/27, (2013) Read More / View Supplemental Materials
Abstract
The Cancer Genome Atlas Pan-Cancer analysis project.Cancer Genome Atlas Research, Network, Genome Characterization Center, Chang K., Creighton CJ, Davis C., Donehower L., Drummond J., Wheeler D., Ally A., Balasundaram M., Birol I., Butterfield YS, Chu A., Chuah E., Chun HJ, Dhalla N., Guin R., Hirst M., Hirst C., Holt RA, et al. Nature genetics, 2013/09/26, Volume 45, Issue 10, p.1113-20, (2013) Read More / View Supplemental Materials
Mutational heterogeneity in cancer and the search for new cancer-associated genes.Lawrence, MS, Stojanov P., Polak P., Kryukov GV, Cibulskis K., Sivachenko A., Carter SL, Stewart C., Mermel CH, Roberts SA, Kiezun A., Hammerman PS, McKenna A., Drier Y., Zou L., Ramos AH, Pugh TJ, Stransky N., Helman E., Kim J., et al. Nature, 2013/07/11, Volume 499, Issue 7457, p.214-8, (2013) Read More / View Supplemental Materials
Abstract
Comprehensive molecular characterization of clear cell renal cell carcinoma.The Cancer Genome Atlas Research, Network, Analysis working group: Baylor College of Medicine, Creighton CJ, Morgan M., Gunaratne PH, Wheeler DA, Gibbs RA, BC Cancer Agency, Gordon Robertson A., Chu A., Broad Institute, Beroukhim R., Cibulskis K., Brigham & Women’s Hospital, Signoretti S., Brown University, Vandin Hsin-Ta Wu F., Raphael BJ, The University of Texas MD Anderson Cancer Center, Verhaak RG, et al. Nature, 2013/06/23, (2013) Read More / View Supplemental Materials
Abstract
The genetic landscape of high-risk neuroblastoma.Pugh, TJ, Morozova O., Attiyeh EF, Asgharzadeh S., Wei JS, Auclair D., Carter SL, Cibulskis K., Hanna M., Kiezun A., Kim J., Lawrence MS, McKenna A., Pedamallu CS, Ramos AH, Shefler E., Sivachenko A., Sougnez C., Stewart C., Ally A., et al. Nature genetics, 2013/01/20, (2013) Read More / View Supplemental Materials
Abstract
2011
MicroRNA-15a and -16-1 act via MYB to elevate fetal hemoglobin expression in human trisomy 13.Sankaran, VG, Menne TF, Šćepanović D., Vergilio JA, Ji P., Kim J., Thiru P., Orkin SH, Lander E. S., and Lodish HF Proceedings of the National Academy of Sciences of the United States of America, 2011/01/25, Volume 108, Issue 4, p.1519-24, (2011) Read More / View Supplemental Materials
Abstract
2007
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.ENCODE Project, Consortium, Birney E., Stamatoyannopoulos JA, Dutta A., Guigó R., Gingeras TR, Margulies EH, Weng Z., Snyder M., Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S., Koch CM, Asthana S., Malhotra A., Adzhubei I., Greenbaum JA, Andrews RM, et al. Nature, 2007/06/14, Volume 447, Issue 7146, p.799-816, (2007) Read More / View Supplemental Materials
Abstract
  • Showing 1-29 of 29 Results