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2015
Prophages of the genus Bifidobacterium as modulating agents of the infant gut microbiota.Lugli, GA, Milani C., Turroni F., Tremblay D., Ferrario C., Mancabelli L., Duranti S., Ward DV, Ossiprandi MC, Moineau S., van Sinderen D., and Ventura M. Environmental microbiology, 2015/12/02, (2015) Read More / View Supplemental Materials
Abstract
Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut.Milani, C., Andrea Lugli G., Duranti S., Turroni F., Mancabelli L., Ferrario C., Mangifesta M., Hevia A., Viappiani A., Scholz M., Arioli S., Sanchez B., Lane J., Ward DV, Hickey R., Mora D., Segata N., Margolles A., van Sinderen D., and Ventura M. Scientific reports, 2015/10/28, Volume 5, p.15782, (2015) Read More / View Supplemental Materials
Abstract
16S community profiling identifies proton pump inhibitor related differences in gastric, lung, and oropharyngeal microflora.Rosen, R., Hu L., Amirault J., Khatwa U., Ward DV, and Onderdonk A. The Journal of pediatrics, 2015/04/01, Volume 166, Issue 4, p.917-23, (2015) Read More / View Supplemental Materials
Abstract
Center Variation in Intestinal Microbiota Prior to Late-Onset Sepsis in Preterm Infants.Taft, DH, Ambalavanan N., Schibler KR, Yu Z., Newburg DS, Deshmukh H., Ward DV, and Morrow AL PloS one, 2015/01/01, Volume 10, Issue 6, p.e0130604, (2015) Read More / View Supplemental Materials
Abstract
2014
Draft genome sequences of six enterohepatic helicobacter species isolated from humans and one from rhesus macaques.Shen, Z., Sheh A., Young SK, Abouelliel A., Ward DV, Earl AM, and Fox JG Genome announcements, 2014/09/11, Volume 2, Issue 5, (2014) Read More / View Supplemental Materials
Abstract
Early empiric antibiotic use in preterm infants is associated with lower bacterial diversity and higher relative abundance of Enterobacter.Greenwood, C., Morrow AL, Lagomarcino AJ, Altaye M., Taft DH, Yu Z., Newburg DS, Ward DV, and Schibler KR The Journal of pediatrics, 2014/07/01, Volume 165, Issue 1, p.23-9, (2014) Read More / View Supplemental Materials
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16S rRNA gene survey of microbial communities in Winogradsky columns.Ward, DV, and Birren B. PloS one, 2014/01/01, Volume 9, Issue 8, p.e104134, (2014) Read More / View Supplemental Materials
Abstract
Intestinal microbiota of preterm infants differ over time and between hospitals.Taft, DH, Ambalavanan N., Schibler KR, Yu Z., Newburg DS, Ward DV, and Morrow AL Microbiome, 2014/01/01, Volume 2, p.36, (2014) Read More / View Supplemental Materials
Abstract
Standardized metadata for human pathogen/vector genomic sequences.Dugan, VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I., Ward DV, Yao A., Zheng J., Barrett T., Birren B., Brinkac L., Bruno VM, Caler E., Chapman S., et al. PloS one, 2014/01/01, Volume 9, Issue 6, p.e99979, (2014) Read More / View Supplemental Materials
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2012
Serine/threonine phosphatase Stp1 contributes to reduced susceptibility to vancomycin and virulence in Staphylococcus aureus.Cameron, DR, Ward DV, Kostoulias X., Howden BP, Moellering RC Jr, Eliopoulos GM, and Peleg AY The Journal of infectious diseases, 2012/06/01, Volume 205, Issue 11, p.1677-87, (2012) Read More / View Supplemental Materials
Abstract
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes.Giannoukos, G., Ciulla DM, Huang K., Haas BJ, Izard J., Levin JZ, Livny J., Earl AM, Gevers D., Ward DV, Nusbaum C., Birren BW, and Gnirke A. Genome biology, 2012/01/01, Volume 13, Issue 3, p.R23, (2012) Read More / View Supplemental Materials
Abstract
Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease.Papa, E., Docktor M., Smillie C., Weber S., Preheim SP, Gevers D., Giannoukos G., Ciulla D., Tabbaa D., Ingram J., Schauer DB, Ward DV, Korzenik JR, Xavier RJ, Bousvaros A., and Alm EJ PloS one, 2012/01/01, Volume 7, Issue 6, p.e39242, (2012) Read More / View Supplemental Materials
Abstract
The success of acinetobacter species; genetic, metabolic and virulence attributes.Peleg, AY, de Breij A., Adams MD, Cerqueira GM, Mocali S., Nibbering PH, Earl AM, Ward DV, Paterson DL, Seifert H., and Dijkshoorn L. PloS one, 2012/01/01, Volume 7, Issue 10, p.e46984, (2012) Read More / View Supplemental Materials
Abstract
Whole genome characterization of the mechanisms of daptomycin resistance in clinical and laboratory derived isolates of Staphylococcus aureus.Peleg, AY, Miyakis S., Ward DV, Earl AM, Rubio A., Cameron DR, Pillai S., Moellering RC Jr, and Eliopoulos GM PloS one, 2012/01/01, Volume 7, Issue 1, p.e28316, (2012) Read More / View Supplemental Materials
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2011
Distinct microbiome in pouchitis compared to healthy pouches in ulcerative colitis and familial adenomatous polyposis.Zella, GC, Hait EJ, Glavan T., Gevers D., Ward DV, Kitts CL, and Korzenik JR Inflammatory bowel diseases, 2011/05/01, Volume 17, Issue 5, p.1092-100, (2011) Read More / View Supplemental Materials
Abstract
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.Yilmaz, P., Kottmann R., Field D., Knight R., Cole JR, Amaral-Zettler L., Gilbert JA, Karsch-Mizrachi I., Johnston A., Cochrane G., Vaughan R., Hunter C., Park J., Morrison N., Rocca-Serra P., Sterk P., Arumugam M., Bailey M., Baumgartner L., Birren BW, et al. Nature biotechnology, 2011/05/01, Volume 29, Issue 5, p.415-20, (2011) Read More / View Supplemental Materials
Abstract
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.Haas, BJ, Gevers D., Earl AM, Feldgarden M., Ward DV, Giannoukos G., Ciulla D., Tabbaa D., Highlander SK, Sodergren E., Methé B., DeSantis TZ, Human Microbiome Consortium, Petrosino JF, Knight R., and Birren BW Genome research, 2011/03/01, Volume 21, Issue 3, p.494-504, (2011) Read More / View Supplemental Materials
Abstract
2010
A catalog of reference genomes from the human microbiome.Human Microbiome Jumpstart Reference Strains, Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M., Sodergren E., Chinwalla AT, Feldgarden M., Gevers D., Haas BJ, Madupu R., Ward DV, Birren BW, Gibbs RA, Methe B., Petrosino JF, et al. Science (New York, N.Y.), 2010/05/21, Volume 328, Issue 5981, p.994-9, (2010) Read More / View Supplemental Materials
Abstract
2009
Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung.Gawronski, JD, Wong SM, Giannoukos G., Ward DV, and Akerley BJ Proceedings of the National Academy of Sciences of the United States of America, 2009/09/22, Volume 106, Issue 38, p.16422-7, (2009) Read More / View Supplemental Materials
Abstract
  • Showing 1-19 of 19 Results