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2014
The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.Touchon, M., Yoon EJ, Krizova L., Cerqueira GC, Murphy C., Feldgarden M., Wortman J., Clermont D., Lambert T., Grillot-Courvalin C., Nemec A., and Courvalin P. Genome biology and evolution, 2014/10/13, Volume 6, Issue 10, p.2866-82, (2014) Read More / View Supplemental Materials
Abstract
Selection of unique Escherichia coli clones by random amplified polymorphic DNA (RAPD): Evaluation by whole genome sequencing.Nielsen, KL, Godfrey PA, Stegger M., and Feldgarden M. Journal of microbiological methods, 2014/08/01, Volume 103, p.101-3, (2014) Read More / View Supplemental Materials
Abstract
Staphylococcal enterotoxin P predicts bacteremia in hospitalized patients colonized with methicillin-resistant Staphylococcus aureus.Calderwood, MS, Desjardins CA, Sakoulas G., Nicol R., Cosimi LA, Feldgarden M., Onderdonk AB, Birren BW, Platt R., Huang SS, and CDC Prevention Epicenters Program The Journal of infectious diseases, 2014/02/15, Volume 209, Issue 4, p.571-7, (2014) Read More / View Supplemental Materials
Abstract
Identification of 50 class D β-lactamases and 65 Acinetobacter-derived cephalosporinases in Acinetobacter spp.Périchon, B., Goussard S., Walewski V., Krizova L., Cerqueira G., Murphy C., Feldgarden M., Wortman J., Clermont D., Nemec A., and Courvalin P. Antimicrobial agents and chemotherapy, 2014/01/01, Volume 58, Issue 2, p.936-49, (2014) Read More / View Supplemental Materials
Abstract
Standardized metadata for human pathogen/vector genomic sequences.Dugan, VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I., Ward DV, Yao A., Zheng J., Barrett T., Birren B., Brinkac L., Bruno VM, Caler E., Chapman S., et al. PloS one, 2014/01/01, Volume 9, Issue 6, p.e99979, (2014) Read More / View Supplemental Materials
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2013
Whole-Genome Sequences of 94 Environmental Isolates of Bacillus cereus Sensu Lato.Van der Auwera, GA, Feldgarden M., Kolter R., and Mahillon J. Genome announcements, 2013/10/03, Volume 1, Issue 5, (2013) Read More / View Supplemental Materials
Abstract
2012
Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus.McAdam, PR, Templeton KE, Edwards GF, Holden MT, Feil EJ, Aanensen DM, Spratt BG, Parkhill J., Godfrey PA, Feldgarden M., Rambaut A., and Robinson DA Proceedings of the National Academy of Sciences of the United States of America, 2012/06/05, Volume 109, Issue 23, p.9107-12, (2012) Read More / View Supplemental Materials
Abstract
Draft genome sequences of Staphylococcus aureus sequence type 34 (ST34) and ST42 hybrids.Thomas, JC, Godfrey PA, Feldgarden M., and Robinson DA Journal of bacteriology, 2012/05/01, Volume 194, Issue 10, p.2740-1, (2012) Read More / View Supplemental Materials
Abstract
Candidate targets of balancing selection in the genome of Staphylococcus aureus.Thomas, JC, Godfrey PA, Feldgarden M., and Robinson DA Molecular biology and evolution, 2012/04/01, Volume 29, Issue 4, p.1175-86, (2012) Read More / View Supplemental Materials
Abstract
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.Grad, YH, Lipsitch M., Feldgarden M., Arachchi HM, Cerqueira GC, FitzGerald M., Godfrey P., Haas BJ, Murphy CI, Russ C., Sykes S., Walker BJ, Wortman JR, Young S., Zeng Q., Abouelleil A., Bochicchio J., Chauvin S., Desmet T., Gujja S., et al. Proceedings of the National Academy of Sciences of the United States of America, 2012/02/21, Volume 109, Issue 8, p.3065-70, (2012) Read More / View Supplemental Materials
Abstract
Comparative genomics of enterococci: variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus.Palmer, KL, Godfrey P., Griggs A., Kos VN, Zucker J., Desjardins C., Cerqueira G., Gevers D., Walker S., Wortman J., Feldgarden M., Haas B., Birren B., and Gilmore MS mBio, 2012/01/01, Volume 3, Issue 1, p.e00318-11, (2012) Read More / View Supplemental Materials
Abstract
Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States.Kos, VN, Desjardins CA, Griggs A., Cerqueira G., Holden MT, Godfrey P., Palmer KL, Wortman J., Feldgarden M., Haas BJ, Birren B., and Gilmore MS mBio, 2012/01/01, Volume 3, Issue 3, (2012) Read More / View Supplemental Materials
Abstract
2011
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species.Luo, C., Walk ST, Gordon DM, Feldgarden M., Tiedje JM, and Konstantinidis KT Proceedings of the National Academy of Sciences of the United States of America, 2011/04/26, Volume 108, Issue 17, p.7200-5, (2011) Read More / View Supplemental Materials
Abstract
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.Haas, BJ, Gevers D., Earl AM, Feldgarden M., Ward DV, Giannoukos G., Ciulla D., Tabbaa D., Highlander SK, Sodergren E., Methé B., DeSantis TZ, Human Microbiome Consortium, Petrosino JF, Knight R., and Birren BW Genome research, 2011/03/01, Volume 21, Issue 3, p.494-504, (2011) Read More / View Supplemental Materials
Abstract
2010
A catalog of reference genomes from the human microbiome.Human Microbiome Jumpstart Reference Strains, Consortium, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M., Sodergren E., Chinwalla AT, Feldgarden M., Gevers D., Haas BJ, Madupu R., Ward DV, Birren BW, Gibbs RA, Methe B., Petrosino JF, et al. Science (New York, N.Y.), 2010/05/21, Volume 328, Issue 5981, p.994-9, (2010) Read More / View Supplemental Materials
Abstract
High-quality draft genome sequences of 28 Enterococcus sp. isolates.Palmer, KL, Carniol K., Manson JM, Heiman D., Shea T., Young S., Zeng Q., Gevers D., Feldgarden M., Birren B., and Gilmore MS Journal of bacteriology, 2010/05/01, Volume 192, Issue 9, p.2469-70, (2010) Read More / View Supplemental Materials
Abstract
  • Showing 1-16 of 16 Results