Scientific Publications

Search by Keyword(s)
Found 31 results

Filters: Author is Carpenter, AE  [Clear All Filters]

Search Results

  • Showing 1-31 of 31 Results
2014
Toward performance-diverse small-molecule libraries for cell-based phenotypic screening using multiplexed high-dimensional profiling.Wawer, MJ, Li K., Gustafsdottir SM, Ljosa V., Bodycombe NE, Marton MA, Sokolnicki KL, Bray MA, Kemp MM, Winchester E., Taylor B., Grant GB, Hon CS, Duvall JR, Wilson JA, Bittker JA, Dančík V., Narayan R., Subramanian A., Winckler W., et al. Proceedings of the National Academy of Sciences of the United States of America, 2014/07/14, (2014) Read More / View Supplemental Materials
Abstract
High- and low-throughput scoring of fat mass and body fat distribution in C. elegans.Wählby, C., Lee Conery A., Bray MA, Kamentsky L., Larkins-Ford J., Sokolnicki KL, Veneskey M., Michaels K., Carpenter AE, and O'Rourke EJ Methods (San Diego, Calif.), 2014/04/28, (2014) Read More / View Supplemental Materials
Abstract
Increasing the Content of High-Content Screening: An Overview.Singh, S., Carpenter AE, and Genovesio A. Journal of biomolecular screening, 2014/04/07, (2014) Read More / View Supplemental Materials
Abstract
Identification of Host-Targeted Small Molecules That Restrict Intracellular Mycobacterium tuberculosis Growth.Stanley, SA, Barczak AK, Silvis MR, Luo SS, Sogi K., Vokes M., Bray MA, Carpenter AE, Moore CB, Siddiqi N., Rubin EJ, and Hung DT PLoS pathogens, 2014/02/01, Volume 10, Issue 2, p.e1003946, (2014) Read More / View Supplemental Materials
Abstract
ZFHX4 Interacts with the NuRD Core Member CHD4 and Regulates the Glioblastoma Tumor-Initiating Cell State.Chudnovsky, Y., Kim D., Zheng S., Whyte WA, Bansal M., Bray MA, Gopal S., Theisen MA, Bilodeau S., Thiru P., Muffat J., Yilmaz OH, Mitalipova M., Woolard K., Lee J., Nishimura R., Sakata N., Fine HA, Carpenter AE, Silver SJ, et al. Cell reports, 2014/01/15, (2014) Read More / View Supplemental Materials
Abstract
High content image analysis identifies novel regulators of synaptogenesis in a high-throughput RNAi screen of primary neurons.Nieland, TJ, Logan DJ, Saulnier J., Lam D., Johnson C., Root DE, Carpenter AE, and Sabatini BL PloS one, 2014/01/01, Volume 9, Issue 3, p.e91744, (2014) Read More / View Supplemental Materials
Abstract
2013
Multiplex cytological profiling assay to measure diverse cellular States.Gustafsdottir, SM, Ljosa V., Sokolnicki KL, Anthony Wilson J., Walpita D., Kemp MM, Petri Seiler K., Carrel HA, Golub T. R., Schreiber SL, Clemons PA, Carpenter AE, and Shamji AF PloS one, 2013/12/02, Volume 8, Issue 12, p.e80999, (2013) Read More / View Supplemental Materials
Abstract
Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment.Ljosa, V., Caie PD, Ter Horst R., Sokolnicki KL, Jenkins EL, Daya S., Roberts ME, Jones TR, Singh S., Genovesio A., Clemons PA, Carragher NO, and Carpenter AE Journal of biomolecular screening, 2013/12/01, Volume 18, Issue 10, p.1321-9, (2013) Read More / View Supplemental Materials
Abstract
Niche-based screening identifies small-molecule inhibitors of leukemia stem cells.Hartwell, KA, Miller PG, Mukherjee S., Kahn AR, Stewart AL, Logan DJ, Negri JM, Duvet M., Järås M., Puram R., Dancik V., Al-Shahrour F., Kindler T., Tothova Z., Chattopadhyay S., Hasaka T., Narayan R., Dai M., Huang C., Shterental S., et al. Nature chemical biology, 2013/12/01, Volume 9, Issue 12, p.840-8, (2013) Read More / View Supplemental Materials
Abstract
Identification of small molecules for human hepatocyte expansion and iPS differentiation.Shan, J., Schwartz RE, Ross NT, Logan DJ, Thomas D., Duncan SA, North TE, Goessling W., Carpenter AE, and Bhatia SN Nature chemical biology, 2013/08/01, Volume 9, Issue 8, p.514-20, (2013) Read More / View Supplemental Materials
Abstract
A Microscale Human Liver Platform that Supports the Hepatic Stages of Plasmodium falciparum and vivax.March, S., Ng S., Velmurugan S., Galstian A., Shan J., Logan DJ, Carpenter AE, Thomas D., Sim BK, Mota MM, Hoffman SL, and Bhatia SN Cell host & microbe, 2013/07/17, Volume 14, Issue 1, p.104-15, (2013) Read More / View Supplemental Materials
Abstract
2012
Identification of regulators of polyploidization presents therapeutic targets for treatment of AMKL.Wen, Q., Goldenson B., Silver SJ, Schenone M., Dancik V., Huang Z., Wang LZ, Lewis TA, An WF, Li X., Bray MA, Thiollier C., Diebold L., Gilles L., Vokes MS, Moore CB, Bliss-Moreau M., VerPlank L., Tolliday NJ, Mishra R., et al. Cell, 2012/08/03, Volume 150, Issue 3, p.575-89, (2012) Read More / View Supplemental Materials
Abstract
Annotated high-throughput microscopy image sets for validation.Ljosa, V., Sokolnicki KL, and Carpenter AE Nature methods, 2012/06/28, Volume 9, Issue 7, p.637, (2012) Read More / View Supplemental Materials
A call for bioimaging software usability.Carpenter, AE, Kamentsky L., and Eliceiri KW Nature methods, 2012/06/28, Volume 9, Issue 7, p.666-70, (2012) Read More / View Supplemental Materials
An image analysis toolbox for high-throughput C. elegans assays.Wählby, C., Kamentsky L., Liu ZH, Riklin-Raviv T., Conery AL, O'Rourke EJ, Sokolnicki KL, Visvikis O., Ljosa V., Irazoqui JE, Golland P., Ruvkun G., Ausubel FM, and Carpenter AE Nature methods, 2012/04/22, (2012) Read More / View Supplemental Materials
Abstract
Extracting rich information from images.Carpenter, AE Methods in molecular biology (Clifton, N.J.), 2012/01/09, Volume 486, p.193-211, (2012) Read More / View Supplemental Materials
Abstract
A Chemical Screen Probing the Relationship between Mitochondrial Content and Cell Size.Kitami, T., Logan DJ, Negri J., Hasaka T., Tolliday NJ, Carpenter AE, Spiegelman BM, and Mootha VK PloS one, 2012/01/01, Volume 7, Issue 3, p.e33755, (2012) Read More / View Supplemental Materials
Abstract
2011
Visualization of parameter space for image analysis.Pretorius, AJ, Bray MA, Carpenter AE, and Ruddle RA IEEE transactions on visualization and computer graphics, 2011/12/01, Volume 17, Issue 12, p.2402-11, (2011) Read More / View Supplemental Materials
Abstract
Workflow and Metrics for Image Quality Control in Large-Scale High-Content Screens.Bray, MA, Fraser AN, Hasaka TP, and Carpenter AE Journal of biomolecular screening, 2011/09/28, (2011) Read More / View Supplemental Materials
Abstract
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.Kamentsky, L., Jones TR, Fraser A., Bray MA, Logan DJ, Madden KL, Ljosa V., Rueden C., Eliceiri KW, and Carpenter AE Bioinformatics (Oxford, England), 2011/04/15, Volume 27, Issue 8, p.1179-80, (2011) Read More / View Supplemental Materials
Abstract
Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice.Elkabets, M., Gifford AM, Scheel C., Nilsson B., Reinhardt F., Bray MA, Carpenter AE, Jirström K., Magnusson K., Ebert BL, Pontén F., Weinberg R. A., and McAllister SS The Journal of clinical investigation, 2011/02/01, Volume 121, Issue 2, p.784-99, (2011) Read More / View Supplemental Materials
Abstract
2010
Screening cellular feature measurements for image-based assay development.Logan, DJ, and Carpenter AE Journal of biomolecular screening, 2010/08/01, Volume 15, Issue 7, p.840-6, (2010) Read More / View Supplemental Materials
Abstract
RESOLVING CLUSTERED WORMS VIA PROBABILISTIC SHAPE MODELS.Wählby, C., Riklin-Raviv T., Ljosa V., Conery AL, Golland P., Ausubel FM, and Carpenter AE Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging, 2010/06/21, Volume 2010, Issue 14-17 April 2010, p.552-555, (2010) Read More / View Supplemental Materials
Abstract
2009
Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening.Ljosa, V., and Carpenter AE PLoS computational biology, 2009/12/01, Volume 5, Issue 12, p.e1000603, (2009) Read More / View Supplemental Materials
Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution.Nilsson, B., Johansson M., Al-Shahrour F., Carpenter AE, and Ebert BL Bioinformatics (Oxford, England), 2009/04/15, Volume 25, Issue 8, p.1078-9, (2009) Read More / View Supplemental Materials
Abstract
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning.Jones, TR, Carpenter AE, Lamprecht MR, Moffat J., Silver SJ, Grenier JK, Castoreno AB, Eggert US, Root DE, Golland P., and Sabatini DM Proceedings of the National Academy of Sciences of the United States of America, 2009/02/10, Volume 106, Issue 6, p.1826-31, (2009) Read More / View Supplemental Materials
Abstract
2008
CellProfiler Analyst: data exploration and analysis software for complex image-based screens.Jones, TR, Kang IH, Wheeler DB, Lindquist RA, Papallo A., Sabatini DM, Golland P., and Carpenter AE BMC bioinformatics, 2008/11/15, Volume 9, p.482, (2008) Read More / View Supplemental Materials
Abstract
High-throughput screens for fluorescent dye discovery.Ljosa, V., and Carpenter AE Trends in biotechnology, 2008/10/01, Volume 26, Issue 10, p.527-30, (2008) Read More / View Supplemental Materials
Abstract
Using CellProfiler for automatic identification and measurement of biological objects in images.Vokes, MS, and Carpenter AE Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.], 2008/04/01, Volume Chapter 14, p.Unit 14.17, (2008) Read More / View Supplemental Materials
Abstract
2007
Image-based chemical screening.Carpenter, AE Nature chemical biology, 2007/08/01, Volume 3, Issue 8, p.461-5, (2007) Read More / View Supplemental Materials
Abstract
2006
A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen.Moffat, J., Grueneberg DA, Yang X., Kim SY, Kloepfer AM, Hinkle G., Piqani B., Eisenhaure TM, Luo B., Grenier JK, Carpenter AE, Foo SY, Stewart SA, Stockwell BR, Hacohen N., Hahn WC, Lander E. S., Sabatini DM, and Root DE Cell, 2006/03/24, Volume 124, Issue 6, p.1283-98, (2006) Read More / View Supplemental Materials
Abstract
  • Showing 1-31 of 31 Results