Scientific Publications

Annotated high-throughput microscopy image sets for validation.Ljosa, V., Sokolnicki KL, and Carpenter AE Nature methods, 2012/06/28, Volume 9, Issue 7, p.637, (2012) Read More / View Supplemental Materials

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An image analysis toolbox for high-throughput C. elegans assays.Wählby, C., Kamentsky L., Liu ZH, Riklin-Raviv T., Conery AL, O'Rourke EJ, Sokolnicki KL, Visvikis O., Ljosa V., Irazoqui JE, Golland P., Ruvkun G., Ausubel FM, and Carpenter AE Nature methods, 2012/04/22, (2012) Read More / View Supplemental Materials

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Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.Kamentsky, L., Jones TR, Fraser A., Bray MA, Logan DJ, Madden KL, Ljosa V., Rueden C., Eliceiri KW, and Carpenter AE Bioinformatics (Oxford, England), 2011/04/15, Volume 27, Issue 8, p.1179-80, (2011) Read More / View Supplemental Materials

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RESOLVING CLUSTERED WORMS VIA PROBABILISTIC SHAPE MODELS.Wählby, C., Riklin-Raviv T., Ljosa V., Conery AL, Golland P., Ausubel FM, and Carpenter AE Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging, 2010/06/21, Volume 2010, Issue 14-17 April 2010, p.552-555, (2010) Read More / View Supplemental Materials

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Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening.Ljosa, V., and Carpenter AE PLoS computational biology, 2009/12/01, Volume 5, Issue 12, p.e1000603, (2009) Read More / View Supplemental Materials

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High-throughput screens for fluorescent dye discovery.Ljosa, V., and Carpenter AE Trends in biotechnology, 2008/10/01, Volume 26, Issue 10, p.527-30, (2008) Read More / View Supplemental Materials

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Abstract