ATARiS: Computational quantification of gene suppression phenotypes from multi-sample RNAi screens. Shao, DD , Tsherniak A. , Gopal S. , Weir BA , Tamayo P. , Stransky N. , Schumacher SE , Zack TI , Beroukhim R. , Garraway LA , Margolin AA , Root DE , Hahn WC , and Mesirov J. P. Genome research, 2012/12/26, (2012)
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Abstract
β-Catenin-Driven Cancers Require a YAP1 Transcriptional Complex for Survival and Tumorigenesis. Rosenbluh, J. , Nijhawan D. , Cox AG , Li X. , Neal JT , Schafer EJ , Zack TI , Wang X. , Tsherniak A. , Schinzel AC , Shao DD , Schumacher SE , Weir BA , Vazquez F. , Cowley GS , Root DE , Mesirov J. P. , Beroukhim R. , Kuo CJ , Goessling W. , et al. Cell, 2012/12/21, Volume 151, Issue 7, p.1457-73, (2012)
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Abstract
Comprehensive genomic characterization of squamous cell lung cancers. The Cancer Genome Atlas Research, Network , institution.)(Participants are arranged by area of contribution and then by , Genome sequencing centres: Broad Institute , Hammerman PS , Lawrence MS , Voet D. , Jing R. , Cibulskis K. , Sivachenko A. , Stojanov P. , McKenna A. , Lander E. S. , Gabriel S. , Getz G. , Sougnez C. , Imielinski M. , Helman E. , Hernandez B. , Pho NH , Meyerson M. , et al. Nature, 2012/09/09, (2012)
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Abstract
Cancer vulnerabilities unveiled by genomic loss. Nijhawan, D. , Zack TI , Ren Y. , Strickland MR , Lamothe R. , Schumacher SE , Tsherniak A. , Besche HC , Rosenbluh J. , Shehata S. , Cowley GS , Weir BA , Goldberg AL , Mesirov J. P. , Root DE , Bhatia SN , Beroukhim R. , and Hahn WC Cell, 2012/08/17, Volume 150, Issue 4, p.842-54, (2012)
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Abstract
Sequence analysis of mutations and translocations across breast cancer subtypes. Banerji, S. , Cibulskis K. , Rangel-Escareno C. , Brown KK , Carter SL , Frederick AM , Lawrence MS , Sivachenko AY , Sougnez C. , Zou L. , Cortes ML , Fernandez-Lopez JC , Peng S. , Ardlie KG , Auclair D. , Bautista-Piña V. , Duke F. , Francis J. , Jung J. , Maffuz-Aziz A. , et al. Nature, 2012/06/20, Volume 486, Issue 7403, p.405-9, (2012)
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Abstract
GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers. Mermel, CH , Schumacher SE , Hill B. , Meyerson ML , Beroukhim R. , and Getz G. Genome biology, 2012/01/09, Volume 12, Issue 4, p.R41, (2012)
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Abstract
