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  • Showing 1-13 of 13 Results
2014
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation.Shalek, AK, Satija R., Shuga J., Trombetta JJ, Gennert D., Lu D., Chen P., Gertner RS, Gaublomme JT, Yosef N., Schwartz S., Fowler B., Weaver S., Wang J., Wang X., Ding R., Raychowdhury R., Friedman N., Hacohen N., Park H., et al. Nature, 2014/06/19, Volume 509, Issue 7505, p.363-9, (2014) Read More / View Supplemental Materials
Abstract
2013
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.Haas, BJ, Papanicolaou A., Yassour M., Grabherr M., Blood PD, Bowden J., Couger MB, Eccles D., Li B., Lieber M., Macmanes MD, Ott M., Orvis J., Pochet N., Strozzi F., Weeks N., Westerman R., William T., Dewey CN, Henschel R., et al. Nature protocols, 2013/08/01, Volume 8, Issue 8, p.1494-512, (2013) Read More / View Supplemental Materials
Abstract
2012
A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals.Garber, M., Yosef N., Goren A., Raychowdhury R., Thielke A., Guttman M., Robinson J., Minie B., Chevrier N., Itzhaki Z., Blecher-Gonen R., Bornstein C., Amann-Zalcenstein D., Weiner A., Friedrich D., Meldrim J., Ram O., Cheng C., Gnirke A., Fisher S., et al. Molecular cell, 2012/09/14, Volume 47, Issue 5, p.810-22, (2012) Read More / View Supplemental Materials
Abstract
Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species.Yassour, M., Pfiffner J., Levin JZ, Adiconis X., Gnirke A., Nusbaum C., Thompson DA, Friedman N., and Regev A. Genome biology, 2012/01/09, Volume 11, Issue 8, p.R87, (2012) Read More / View Supplemental Materials
Abstract
2011
Full-length transcriptome assembly from RNA-Seq data without a reference genome.Grabherr, MG, Haas BJ, Yassour M., Levin JZ, Thompson DA, Amit I., Adiconis X., Fan L., Raychowdhury R., Zeng Q., Chen Z., Mauceli E., Hacohen N., Gnirke A., Rhind N., Di Palma F., Birren BW, Nusbaum C., Lindblad-Toh K., Friedman N., et al. Nature biotechnology, 2011/05/15, Volume 29, Issue 7, p.644-52, (2011) Read More / View Supplemental Materials
Abstract
Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells.Rabani, M., Levin JZ, Fan L., Adiconis X., Raychowdhury R., Garber M., Gnirke A., Nusbaum C., Hacohen N., Friedman N., Amit I., and Regev A. Nature biotechnology, 2011/05/01, Volume 29, Issue 5, p.436-42, (2011) Read More / View Supplemental Materials
Abstract
Densely interconnected transcriptional circuits control cell states in human hematopoiesis.Novershtern, N., Subramanian A., Lawton LN, Mak RH, Haining WN, McConkey ME, Habib N., Yosef N., Chang CY, Shay T., Frampton GM, Drake AC, Leskov I., Nilsson B., Preffer F., Dombkowski D., Evans JW, Liefeld T., Smutko JS, Chen J., et al. Cell, 2011/01/21, Volume 144, Issue 2, p.296-309, (2011) Read More / View Supplemental Materials
Abstract
2010
Comprehensive comparative analysis of strand-specific RNA sequencing methods.Levin, JZ, Yassour M., Adiconis X., Nusbaum C., Thompson DA, Friedman N., Gnirke A., and Regev A. Nature methods, 2010/09/01, Volume 7, Issue 9, p.709-15, (2010) Read More / View Supplemental Materials
Abstract
Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast.Radman-Livaja, M., Liu CL, Friedman N., Schreiber SL, and Rando OJ PLoS genetics, 2010/02/05, Volume 6, Issue 2, p.e1000837, (2010) Read More / View Supplemental Materials
Abstract
2009
Identifying novel constrained elements by exploiting biased substitution patterns.Garber, M., Guttman M., Clamp M., Zody MC, Friedman N., and Xie X. Bioinformatics (Oxford, England), 2009/06/15, Volume 25, Issue 12, p.i54-62, (2009) Read More / View Supplemental Materials
Abstract
2007
Natural history and evolutionary principles of gene duplication in fungi.Wapinski, I., Pfeffer A., Friedman N., and Regev A. Nature, 2007/09/06, Volume 449, Issue 7158, p.54-61, (2007) Read More / View Supplemental Materials
Abstract
Automatic genome-wide reconstruction of phylogenetic gene trees.Wapinski, I., Pfeffer A., Friedman N., and Regev A. Bioinformatics (Oxford, England), 2007/07/01, Volume 23, Issue 13, p.i549-58, (2007) Read More / View Supplemental Materials
Abstract
2005
Single-nucleosome mapping of histone modifications in S. cerevisiae.Liu, CL, Kaplan T., Kim M., Buratowski S., Schreiber SL, Friedman N., and Rando OJ PLoS biology, 2005/10/01, Volume 3, Issue 10, p.e328, (2005) Read More / View Supplemental Materials
Abstract
  • Showing 1-13 of 13 Results