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2014
Extracting data from the muck: deriving biological insight from complex microbial communities and non-model organisms with next generation sequencing.Solomon, KV, Haitjema CH, Thompson DA, and O'Malley MA Current opinion in biotechnology, 2014/02/03, Volume 28C, p.103-110, (2014) Read More / View Supplemental Materials
Abstract
YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens.Abbey, DA, Funt J., Lurie-Weinberger MN, Thompson DA, Regev A., Myers CL, and Berman J. Genome medicine, 2014/01/01, Volume 6, Issue 11, p.100, (2014) Read More / View Supplemental Materials
Abstract
2013
Comparative analysis of RNA sequencing methods for degraded or low-input samples.Adiconis, X., Borges-Rivera D., Satija R., Deluca DS, Busby MA, Berlin AM, Sivachenko A., Thompson DA, Wysoker A., Fennell T., Gnirke A., Pochet N., Regev A., and Levin JZ Nature methods, 2013/05/19, (2013) Read More / View Supplemental Materials
Abstract
Evolutionary principles of modular gene regulation in yeasts.Thompson, DA, Roy S., Chan M., Styczynsky MP, Pfiffner J., French C., Socha A., Thielke A., Napolitano S., Muller P., Kellis M., Konieczka JH, Wapinski I., and Regev A. eLife, 2013/01/01, Volume 2, p.e00603, (2013) Read More / View Supplemental Materials
Abstract
2012
Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species.Yassour, M., Pfiffner J., Levin JZ, Adiconis X., Gnirke A., Nusbaum C., Thompson DA, Friedman N., and Regev A. Genome biology, 2012/01/09, Volume 11, Issue 8, p.R87, (2012) Read More / View Supplemental Materials
Abstract
2011
Full-length transcriptome assembly from RNA-Seq data without a reference genome.Grabherr, MG, Haas BJ, Yassour M., Levin JZ, Thompson DA, Amit I., Adiconis X., Fan L., Raychowdhury R., Zeng Q., Chen Z., Mauceli E., Hacohen N., Gnirke A., Rhind N., Di Palma F., Birren BW, Nusbaum C., Lindblad-Toh K., Friedman N., et al. Nature biotechnology, 2011/05/15, Volume 29, Issue 7, p.644-52, (2011) Read More / View Supplemental Materials
Abstract
2010
Comprehensive comparative analysis of strand-specific RNA sequencing methods.Levin, JZ, Yassour M., Adiconis X., Nusbaum C., Thompson DA, Friedman N., Gnirke A., and Regev A. Nature methods, 2010/09/01, Volume 7, Issue 9, p.709-15, (2010) Read More / View Supplemental Materials
Abstract
The role of nucleosome positioning in the evolution of gene regulation.Tsankov, AM, Thompson DA, Socha A., Regev A., and Rando OJ PLoS biology, 2010/07/06, Volume 8, Issue 7, p.e1000414, (2010) Read More / View Supplemental Materials
Abstract
2009
Fungal regulatory evolution: cis and trans in the balance.Thompson, DA, and Regev A. FEBS letters, 2009/12/17, Volume 583, Issue 24, p.3959-65, (2009) Read More / View Supplemental Materials
Abstract
  • Showing 1-9 of 9 Results